Variant report

Variant	rs6482453
Chromosome Location	chr10:25190865-25190866
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:25181358..25184436-chr10:25190783..25192831,3	K562	blood:
2	chr10:25189911..25191739-chr10:25240486..25242084,2	K562	blood:
3	chr10:25181922..25187285-chr10:25188265..25192840,10	K562	blood:
4	chr10:25189794..25195375-chr10:25195680..25199995,10	K562	blood:
5	chr10:25011232..25013353-chr10:25188694..25192557,4	K562	blood:
6	chr10:25189925..25191564-chr10:25208946..25210482,2	K562	blood:

Variant related genes	Relation type
ENSG00000099256	Chromatin interaction
ENSG00000107863	Chromatin interaction
ENSG00000240294	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10828735	1.00[JPT][hapmap]
rs11014282	0.83[ASN][1000 genomes]
rs11014306	0.82[CEU][hapmap]
rs11014307	0.81[CEU][hapmap]
rs11014308	0.81[CEU][hapmap]
rs11014309	0.81[CEU][hapmap]
rs12255703	0.81[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12256206	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12257709	0.83[ASN][1000 genomes]
rs1409306	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16925135	0.83[ASN][1000 genomes]
rs16925138	0.83[ASN][1000 genomes]
rs16925145	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2220708	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4504964	1.00[ASN][1000 genomes]
rs57654443	1.00[ASN][1000 genomes]
rs57681668	0.83[ASN][1000 genomes]
rs59876862	1.00[ASN][1000 genomes]
rs61854283	0.83[ASN][1000 genomes]
rs6482454	1.00[CEU][hapmap];0.90[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482455	0.81[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6482465	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7072126	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7075926	1.00[ASN][1000 genomes]
rs7078660	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7080496	0.83[ASN][1000 genomes]
rs7084900	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7087994	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7100005	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs729141	1.00[JPT][hapmap]
rs73606586	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73606590	1.00[ASN][1000 genomes]
rs73606602	1.00[ASN][1000 genomes]
rs73608205	1.00[ASN][1000 genomes]
rs7905478	1.00[ASN][1000 genomes]
rs7910241	0.81[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7918015	0.82[CEU][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053278	chr10:25140776-25269093	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25177400-25200400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr10:25181000-25195000	Weak transcription	Aorta	Aorta
3	chr10:25187000-25199200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:25188200-25191600	Enhancers	Brain Hippocampus Middle	brain
5	chr10:25188800-25192000	Enhancers	Primary B cells from peripheral blood	blood
6	chr10:25188800-25192200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr10:25189200-25191600	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr10:25189200-25191600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr10:25189400-25191600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr10:25189600-25191600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr10:25189600-25191600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr10:25189600-25191800	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr10:25189800-25191200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr10:25189800-25191200	Enhancers	Fetal Heart	heart
15	chr10:25189800-25191600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr10:25189800-25191600	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr10:25189800-25191600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr10:25189800-25191600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr10:25189800-25191600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr10:25189800-25191600	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr10:25189800-25191600	Enhancers	HSMMtube	muscle
22	chr10:25189800-25191800	Enhancers	Muscle Satellite Cultured Cells	--
23	chr10:25189800-25191800	Enhancers	NHDF-Ad	bronchial
24	chr10:25189800-25191800	Enhancers	NHLF	lung
25	chr10:25189800-25192200	Enhancers	Stomach Mucosa	stomach
26	chr10:25190000-25191000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr10:25190000-25191000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr10:25190000-25191200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr10:25190000-25191400	Enhancers	Primary T helper naive cells from peripheral blood	blood
30	chr10:25190000-25191400	Enhancers	Colon Smooth Muscle	Colon
31	chr10:25190000-25191600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr10:25190000-25191600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr10:25190000-25191600	Enhancers	Fetal Kidney	kidney
34	chr10:25190000-25191600	Enhancers	Fetal Lung	lung
35	chr10:25190000-25191600	Enhancers	Ovary	ovary
36	chr10:25190000-25191600	Enhancers	Small Intestine	intestine
37	chr10:25190000-25191800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr10:25190000-25191800	Enhancers	Duodenum Smooth Muscle	Duodenum
39	chr10:25190000-25191800	Enhancers	HSMM	muscle
40	chr10:25190000-25191800	Enhancers	NHEK	skin
41	chr10:25190000-25192200	Enhancers	HMEC	breast
42	chr10:25190000-25194600	Enhancers	Fetal Intestine Large	intestine
43	chr10:25190200-25191000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr10:25190200-25191400	Enhancers	Primary hematopoietic stem cells short term culture	blood
45	chr10:25190200-25191400	Enhancers	Primary T helper cells fromperipheralblood	blood
46	chr10:25190200-25191600	Enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr10:25190200-25191600	Enhancers	Fetal Stomach	stomach
48	chr10:25190200-25191600	Enhancers	Skeletal Muscle Male	skeletal muscle
49	chr10:25190200-25191800	Enhancers	HUVEC	blood vessel
50	chr10:25190200-25192600	Enhancers	Fetal Intestine Small	intestine

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