Variant report

Variant	rs7087994
Chromosome Location	chr10:25183845-25183846
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:25181358..25184436-chr10:25190783..25192831,3	K562	blood:
2	chr10:25181922..25187285-chr10:25188265..25192840,10	K562	blood:
3	chr10:25177136..25181443-chr10:25181822..25184864,5	K562	blood:
4	chr10:25176620..25181540-chr10:25182272..25186029,7	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10828735	1.00[JPT][hapmap]
rs11014306	0.82[CEU][hapmap]
rs11014307	0.81[CEU][hapmap]
rs11014308	0.81[CEU][hapmap]
rs11014309	0.81[CEU][hapmap]
rs12255703	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs12256206	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs1409306	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs16925145	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs2220708	1.00[JPT][hapmap]
rs6482453	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6482454	1.00[CEU][hapmap];0.84[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6482455	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs6482465	1.00[JPT][hapmap]
rs7072126	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7078660	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs7084900	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs7100005	1.00[JPT][hapmap]
rs729141	1.00[JPT][hapmap]
rs73606586	0.93[EUR][1000 genomes]
rs7910241	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs7918015	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053278	chr10:25140776-25269093	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25168200-25188200	Weak transcription	Brain Hippocampus Middle	brain
2	chr10:25168200-25189000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr10:25174000-25186200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr10:25175800-25189800	Weak transcription	Stomach Mucosa	stomach
5	chr10:25175800-25190000	Weak transcription	Fetal Lung	lung
6	chr10:25177400-25185600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:25177400-25200400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr10:25178400-25184000	Enhancers	Hela-S3	cervix
9	chr10:25179400-25190400	Weak transcription	Fetal Muscle Trunk	muscle
10	chr10:25179600-25186200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr10:25179600-25186200	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr10:25179800-25189200	Weak transcription	Duodenum Mucosa	Duodenum
13	chr10:25180000-25188000	Weak transcription	Brain Cingulate Gyrus	brain
14	chr10:25181000-25195000	Weak transcription	Aorta	Aorta
15	chr10:25181200-25189200	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr10:25181400-25186000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr10:25181400-25186200	Weak transcription	NHEK	skin
18	chr10:25181600-25186400	Weak transcription	HMEC	breast
19	chr10:25181800-25186000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr10:25181800-25186000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr10:25182200-25184000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr10:25182200-25184000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr10:25182200-25184000	Strong transcription	Fetal Intestine Small	intestine
24	chr10:25182200-25184000	Enhancers	NHLF	lung
25	chr10:25182400-25184000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr10:25182400-25184000	Enhancers	NH-A	brain
27	chr10:25182600-25186200	Enhancers	K562	blood
28	chr10:25182600-25187000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
29	chr10:25182600-25187200	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr10:25182600-25188200	Weak transcription	Brain Substantia Nigra	brain
31	chr10:25182800-25184000	Enhancers	Muscle Satellite Cultured Cells	--
32	chr10:25182800-25184000	Enhancers	A549	lung
33	chr10:25182800-25184000	Enhancers	HSMM	muscle
34	chr10:25182800-25184600	Enhancers	Primary B cells from peripheral blood	blood
35	chr10:25183000-25184000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr10:25183000-25184200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
37	chr10:25183200-25184000	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr10:25183200-25184000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
39	chr10:25183200-25184000	Strong transcription	Fetal Stomach	stomach
40	chr10:25183200-25184000	Enhancers	GM12878-XiMat	blood
41	chr10:25183200-25184200	Enhancers	Primary T cells from cord blood	blood
42	chr10:25183200-25186800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
43	chr10:25183400-25184000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
44	chr10:25183400-25184000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
45	chr10:25183400-25184000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
46	chr10:25183400-25184000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
47	chr10:25183400-25184000	Enhancers	Fetal Thymus	thymus
48	chr10:25183400-25184000	Enhancers	Sigmoid Colon	Sigmoid Colon
49	chr10:25183400-25184000	Flanking Active TSS	Osteobl	bone
50	chr10:25183400-25190800	Weak transcription	Thymus	Thymus

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