Variant report

Variant	rs4748978
Chromosome Location	chr10:25052109-25052110
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10466055	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10764492	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11014220	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11014222	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1414456	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1414457	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1414458	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1414459	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs2152432	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4072915	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4570483	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4747494	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4747498	0.80[EUR][1000 genomes]
rs4748970	1.00[CEU][hapmap];0.85[CHB][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4748977	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4748981	0.80[EUR][1000 genomes]
rs6482420	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6482421	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6482422	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6482424	0.89[EUR][1000 genomes]
rs6482428	0.88[CEU][hapmap]
rs6482439	0.83[EUR][1000 genomes]
rs6482440	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6482443	0.84[EUR][1000 genomes]
rs7067766	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7071605	0.82[EUR][1000 genomes]
rs7071609	0.83[EUR][1000 genomes]
rs7083008	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7900706	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7907931	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7911992	0.82[EUR][1000 genomes]
rs7912395	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7916054	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7919485	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7922575	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs951857	0.82[EUR][1000 genomes]
rs951859	0.84[EUR][1000 genomes]
rs952917	0.85[EUR][1000 genomes]

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25049000-25053400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr10:25050000-25053600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr10:25050800-25052200	Enhancers	Fetal Thymus	thymus
4	chr10:25051000-25052200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr10:25051000-25052200	Enhancers	Liver	Liver
6	chr10:25051000-25052200	Enhancers	NH-A	brain
7	chr10:25051000-25052400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr10:25051000-25052400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr10:25051000-25052400	Flanking Active TSS	Dnd41	blood
10	chr10:25051000-25052400	Enhancers	NHLF	lung
11	chr10:25051000-25052600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr10:25051200-25052200	Enhancers	Placenta	Placenta
13	chr10:25051200-25052200	Enhancers	HMEC	breast
14	chr10:25051200-25052200	Enhancers	HUVEC	blood vessel
15	chr10:25051200-25052200	Enhancers	NHDF-Ad	bronchial
16	chr10:25051200-25052400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr10:25051200-25052400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:25051200-25052400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr10:25051200-25052400	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr10:25051200-25052400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr10:25051200-25052400	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr10:25051200-25052400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr10:25051200-25052400	Enhancers	Fetal Kidney	kidney
24	chr10:25051200-25052400	Enhancers	Fetal Lung	lung
25	chr10:25051200-25052400	Enhancers	HSMMtube	muscle
26	chr10:25051200-25052400	Enhancers	Osteobl	bone
27	chr10:25051200-25052600	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr10:25051200-25052600	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr10:25051200-25052600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr10:25051200-25052600	Enhancers	HSMM	muscle
31	chr10:25051400-25052400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr10:25051600-25052200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
33	chr10:25051600-25052200	Enhancers	Fetal Muscle Leg	muscle
34	chr10:25051600-25052200	Enhancers	Sigmoid Colon	Sigmoid Colon
35	chr10:25051600-25052400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
36	chr10:25051600-25052400	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr10:25051600-25052400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr10:25051600-25052400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr10:25051800-25052200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr10:25051800-25052200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
41	chr10:25051800-25052200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr10:25051800-25052200	Enhancers	Thymus	Thymus
43	chr10:25051800-25052200	Enhancers	NHEK	skin
44	chr10:25051800-25052600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
45	chr10:25051800-25053600	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr10:25052000-25052200	Enhancers	H1 Cell Line	embryonic stem cell
47	chr10:25052000-25052200	Enhancers	H9 Cell Line	embryonic stem cell
48	chr10:25052000-25052200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr10:25052000-25052200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
50	chr10:25052000-25052200	Enhancers	Fetal Heart	heart

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