Variant report

Variant	rs6482439
Chromosome Location	chr10:25051085-25051086
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25049658..25051410-chr10:25305266..25306880,2	K562	blood:

Variant related genes	Relation type
ENSG00000185875	Chromatin interaction

rs_ID	r²[population]
rs10466055	0.80[AMR][1000 genomes]
rs2152432	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4570483	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4748977	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4748978	0.83[EUR][1000 genomes]
rs6482440	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25045600-25051200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr10:25045600-25051600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:25049000-25053400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr10:25049400-25051200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr10:25050000-25053600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr10:25050200-25051200	Weak transcription	HMEC	breast
7	chr10:25050600-25051200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr10:25050600-25051800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr10:25050800-25051400	Enhancers	Stomach Mucosa	stomach
10	chr10:25050800-25051400	Enhancers	Thymus	Thymus
11	chr10:25050800-25052000	Enhancers	HepG2	liver
12	chr10:25050800-25052200	Enhancers	Fetal Thymus	thymus
13	chr10:25051000-25051800	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr10:25051000-25051800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr10:25051000-25051800	Enhancers	Muscle Satellite Cultured Cells	--
16	chr10:25051000-25052000	Enhancers	Primary T cells from cord blood	blood
17	chr10:25051000-25052000	Enhancers	A549	lung
18	chr10:25051000-25052200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr10:25051000-25052200	Enhancers	Liver	Liver
20	chr10:25051000-25052200	Enhancers	NH-A	brain
21	chr10:25051000-25052400	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr10:25051000-25052400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr10:25051000-25052400	Flanking Active TSS	Dnd41	blood
24	chr10:25051000-25052400	Enhancers	NHLF	lung
25	chr10:25051000-25052600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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