Variant report

Variant	rs4748969
Chromosome Location	chr10:25015618-25015619
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:25013419..25016120-chr10:25016203..25020041,5	K562	blood:
2	chr10:25010212..25016288-chr10:25239162..25243925,7	K562	blood:
3	chr10:25010253..25012867-chr10:25014871..25018397,3	K562	blood:
4	chr10:25008982..25015736-chr10:25303520..25307645,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000107863	Chromatin interaction
ENSG00000099256	Chromatin interaction
ENSG00000151023	Chromatin interaction
ENSG00000273107	Chromatin interaction
ENSG00000185875	Chromatin interaction

rs_ID	r²[population]
rs1414459	0.80[CEU][hapmap]
rs2367070	1.00[CHB][hapmap]
rs6482428	0.94[CEU][hapmap];1.00[CHB][hapmap];0.80[EUR][1000 genomes]
rs7089436	1.00[CHB][hapmap]

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25014000-25017000	Weak transcription	Spleen	Spleen
2	chr10:25014200-25016000	Weak transcription	Placenta	Placenta
3	chr10:25014200-25016400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr10:25014200-25016400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr10:25014200-25016800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:25014400-25016600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr10:25014400-25016600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr10:25014400-25016800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr10:25014400-25016800	Weak transcription	Brain Substantia Nigra	brain
10	chr10:25014400-25020400	Weak transcription	NHEK	skin
11	chr10:25014600-25015800	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr10:25014600-25016400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr10:25014600-25020400	Weak transcription	HMEC	breast
14	chr10:25014800-25017000	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr10:25015000-25016400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr10:25015000-25016800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr10:25015200-25016400	Weak transcription	HepG2	liver
18	chr10:25015200-25016600	Weak transcription	K562	blood
19	chr10:25015400-25016200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr10:25015600-25016200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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