Variant report

Variant	rs2367070
Chromosome Location	chr10:24914386-24914387
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:24913146..24915618-chr10:24916325..24918417,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2367063	0.83[CEU][hapmap];0.85[EUR][1000 genomes]
rs2367064	0.85[EUR][1000 genomes]
rs4748969	1.00[CHB][hapmap]
rs6482428	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs7089436	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72784264	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72784273	0.80[EUR][1000 genomes]
rs72784277	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72784284	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72784286	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72784289	1.00[ASN][1000 genomes]
rs72784290	0.83[ASN][1000 genomes]
rs72793521	1.00[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2367070	NEBL	cis	parietal	SCAN
rs2367070	C10orf67	cis	parietal	SCAN
rs2367070	PRTFDC1	cis	cerebellum	SCAN

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:24881400-24922400	Weak transcription	Spleen	Spleen
2	chr10:24882200-24920200	Weak transcription	Gastric	stomach
3	chr10:24886600-24921000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:24886800-24916600	Weak transcription	Small Intestine	intestine
5	chr10:24887200-24920800	Weak transcription	Aorta	Aorta
6	chr10:24890000-24923800	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr10:24892000-24915200	Weak transcription	HUVEC	blood vessel
8	chr10:24892200-24924600	Weak transcription	Psoas Muscle	Psoas
9	chr10:24892800-24917800	Weak transcription	Colonic Mucosa	Colon
10	chr10:24894400-24924600	Weak transcription	Ovary	ovary
11	chr10:24894400-24926000	Weak transcription	Stomach Mucosa	stomach
12	chr10:24894600-24924400	Weak transcription	Left Ventricle	heart
13	chr10:24894600-24940000	Weak transcription	HSMMtube	muscle
14	chr10:24894800-24922200	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr10:24896600-24936400	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr10:24896800-24918600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr10:24896800-24922800	Weak transcription	Fetal Kidney	kidney
18	chr10:24896800-24924000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr10:24897000-24917400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr10:24897000-24919600	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr10:24900600-24931800	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr10:24901000-24914800	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr10:24903000-24923200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr10:24905600-24921200	Weak transcription	Hela-S3	cervix
25	chr10:24906800-24947200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr10:24907600-24919400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr10:24907800-24916600	Weak transcription	K562	blood
28	chr10:24907800-24919400	Weak transcription	Fetal Intestine Small	intestine
29	chr10:24907800-24919600	Weak transcription	Brain Germinal Matrix	brain
30	chr10:24907800-24957200	Weak transcription	Esophagus	oesophagus
31	chr10:24908000-24917200	Weak transcription	Colon Smooth Muscle	Colon
32	chr10:24908000-24919400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr10:24908000-24919800	Weak transcription	HepG2	liver
34	chr10:24908000-24920000	Weak transcription	Pancreas	Pancrea
35	chr10:24908000-24922000	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr10:24908200-24921600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr10:24908400-24921600	Weak transcription	NH-A	brain
38	chr10:24908400-24995400	Weak transcription	Stomach Smooth Muscle	stomach
39	chr10:24908600-24914800	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr10:24908600-24919400	Weak transcription	Fetal Stomach	stomach
41	chr10:24908600-24919400	Weak transcription	Lung	lung
42	chr10:24908800-24920600	Weak transcription	Placenta	Placenta
43	chr10:24908800-24921400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr10:24908800-24940000	Weak transcription	Fetal Muscle Leg	muscle
45	chr10:24909000-24914800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr10:24909000-24916000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr10:24909000-24916600	Weak transcription	HSMM	muscle
48	chr10:24909000-24920400	Weak transcription	NHEK	skin
49	chr10:24909400-24916800	Weak transcription	HMEC	breast
50	chr10:24909600-24919600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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