Variant report

Variant	rs72784264
Chromosome Location	chr10:24862664-24862665
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11014165	0.88[EUR][1000 genomes]
rs2367063	0.83[EUR][1000 genomes]
rs2367064	0.83[EUR][1000 genomes]
rs2367070	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7089436	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72784273	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72784277	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72784284	0.83[ASN][1000 genomes]
rs72784286	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs72784289	0.83[ASN][1000 genomes]
rs72793521	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037958	chr10:24806631-24901088	Weak transcription Strong transcription Genic enhancers Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1053560	chr10:24843786-24863020	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1042256	chr10:24846703-24863020	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:24857400-24910400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:24859800-24873400	Weak transcription	Gastric	stomach
3	chr10:24860800-24873600	Weak transcription	Spleen	Spleen
4	chr10:24861400-24863600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr10:24861400-24875200	Weak transcription	Psoas Muscle	Psoas
6	chr10:24861400-24907400	Weak transcription	Esophagus	oesophagus
7	chr10:24862600-24866000	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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