Variant report

Variant	rs72784284
Chromosome Location	chr10:24926724-24926725
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr10:24926680-24926856	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:24915795..24918508-chr10:24926358..24928005,2	K562	blood:
2	chr10:24926297..24929907-chr10:25304441..25307349,3	MCF-7	breast:

Variant related genes	Relation type
RNA5SP305	TF binding region
ENSG00000151023	Chromatin interaction
ENSG00000185875	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2367063	0.82[EUR][1000 genomes]
rs2367064	0.82[EUR][1000 genomes]
rs2367070	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56214051	0.86[EUR][1000 genomes]
rs7089436	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72784264	0.83[ASN][1000 genomes]
rs72784277	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72784286	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72784289	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72784290	0.83[ASN][1000 genomes]
rs72793521	1.00[ASN][1000 genomes]

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:24894600-24940000	Weak transcription	HSMMtube	muscle
2	chr10:24896600-24936400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr10:24900600-24931800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr10:24906800-24947200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:24907800-24957200	Weak transcription	Esophagus	oesophagus
6	chr10:24908400-24995400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr10:24908800-24940000	Weak transcription	Fetal Muscle Leg	muscle
8	chr10:24912200-24932000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr10:24912600-24935200	Weak transcription	Right Ventricle	heart
10	chr10:24913000-24932000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr10:24913200-24929600	Weak transcription	Adipose Nuclei	Adipose
12	chr10:24917000-24931800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr10:24917200-24932000	Weak transcription	K562	blood
14	chr10:24917400-24931800	Weak transcription	Liver	Liver
15	chr10:24917400-24931800	Weak transcription	Duodenum Mucosa	Duodenum
16	chr10:24918600-24928200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr10:24919400-24936200	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr10:24920000-24931600	Weak transcription	A549	lung
19	chr10:24920200-24952200	Weak transcription	NHLF	lung
20	chr10:24920200-24957200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr10:24920400-24929400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr10:24920400-24932400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr10:24920400-24936800	Weak transcription	Fetal Intestine Small	intestine
24	chr10:24920800-24939600	Weak transcription	Fetal Stomach	stomach
25	chr10:24920800-24939600	Weak transcription	Pancreas	Pancrea
26	chr10:24921000-24931800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr10:24921000-24932000	Weak transcription	HUVEC	blood vessel
28	chr10:24921000-24940000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr10:24921200-24927800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr10:24921200-24934800	Weak transcription	Brain Germinal Matrix	brain
31	chr10:24921600-24931600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr10:24921600-24932600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr10:24921800-24931800	Weak transcription	Hela-S3	cervix
34	chr10:24921800-24932000	Weak transcription	NH-A	brain
35	chr10:24922000-24931800	Weak transcription	HepG2	liver
36	chr10:24922000-24932600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr10:24922000-24939600	Weak transcription	Fetal Lung	lung
38	chr10:24922200-24929400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr10:24922200-24932000	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr10:24922200-24932000	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr10:24922200-24932800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr10:24922200-24938200	Weak transcription	Fetal Intestine Large	intestine
43	chr10:24922400-24931600	Weak transcription	NHEK	skin
44	chr10:24922400-24932000	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr10:24922400-24932400	Weak transcription	Small Intestine	intestine
46	chr10:24923800-24929400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr10:24923800-24932000	Weak transcription	HSMM	muscle
48	chr10:24924000-24929400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr10:24924000-24934200	Weak transcription	Dnd41	blood
50	chr10:24924400-24952800	Weak transcription	Fetal Brain Female	brain

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