Variant report

Variant	rs2367063
Chromosome Location	chr10:24887932-24887933
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:24887348-24888689	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:24886754..24889301-chr10:24899357..24900916,2	K562	blood:
2	chr10:24882393..24885386-chr10:24887380..24889547,2	K562	blood:

Variant related genes	Relation type
ARHGAP21	TF binding region
ENSG00000107863	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11014165	0.86[EUR][1000 genomes]
rs2367064	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2367070	0.83[CEU][hapmap];0.85[EUR][1000 genomes]
rs56214051	0.86[EUR][1000 genomes]
rs7089436	0.87[CEU][hapmap];0.88[EUR][1000 genomes]
rs72784264	0.83[EUR][1000 genomes]
rs72784273	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72784277	0.86[EUR][1000 genomes]
rs72784284	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037958	chr10:24806631-24901088	Weak transcription Strong transcription Genic enhancers Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:24857400-24910400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:24861400-24907400	Weak transcription	Esophagus	oesophagus
3	chr10:24864400-24891600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr10:24864600-24891400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr10:24869000-24911600	Weak transcription	Fetal Heart	heart
6	chr10:24869200-24907400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:24869400-24892000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:24869400-24893800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr10:24870000-24892200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr10:24870400-24893800	Weak transcription	Stomach Mucosa	stomach
11	chr10:24871000-24891600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr10:24871000-24910800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:24871200-24894400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr10:24871600-24891200	Strong transcription	HUES48 Cell Line	embryonic stem cell
15	chr10:24871600-24893000	Strong transcription	Duodenum Mucosa	Duodenum
16	chr10:24871600-24896800	Strong transcription	Adipose Nuclei	Adipose
17	chr10:24871800-24892000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr10:24872000-24890000	Strong transcription	HUES6 Cell Line	embryonic stem cell
19	chr10:24872000-24892800	Strong transcription	Rectal Mucosa Donor 29	rectum
20	chr10:24872000-24894600	Strong transcription	Liver	Liver
21	chr10:24872000-24894800	Strong transcription	Dnd41	blood
22	chr10:24872200-24888600	Strong transcription	HMEC	breast
23	chr10:24872200-24892200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr10:24873200-24894400	Strong transcription	Fetal Intestine Large	intestine
25	chr10:24873400-24891600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr10:24873400-24892600	Strong transcription	Duodenum Smooth Muscle	Duodenum
27	chr10:24873600-24888800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr10:24874200-24892000	Strong transcription	HSMM	muscle
29	chr10:24874200-24892000	Strong transcription	HUVEC	blood vessel
30	chr10:24874200-24892600	Strong transcription	HUES64 Cell Line	embryonic stem cell
31	chr10:24874400-24891800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr10:24874400-24891800	Strong transcription	Muscle Satellite Cultured Cells	--
33	chr10:24874400-24892600	Strong transcription	Stomach Smooth Muscle	stomach
34	chr10:24874400-24894800	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr10:24874400-24897000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr10:24874600-24891000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
37	chr10:24874600-24891800	Strong transcription	NH-A	brain
38	chr10:24874600-24892800	Strong transcription	Placenta	Placenta
39	chr10:24875000-24888000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr10:24875000-24892400	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr10:24875200-24890200	Strong transcription	A549	lung
42	chr10:24875200-24897000	Strong transcription	Rectal Mucosa Donor 31	rectum
43	chr10:24875400-24892000	Strong transcription	NHDF-Ad	bronchial
44	chr10:24876000-24888800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr10:24876400-24888200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr10:24876800-24891800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr10:24877800-24892400	Strong transcription	NHLF	lung
48	chr10:24877800-24892600	Strong transcription	Fetal Muscle Trunk	muscle
49	chr10:24877800-24911600	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr10:24878200-24892000	Strong transcription	Osteobl	bone

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