Variant report

Variant	rs72784273
Chromosome Location	chr10:24876619-24876620
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:24869002..24870941-chr10:24876601..24878120,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11014165	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2367063	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2367064	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2367070	0.80[EUR][1000 genomes]
rs56214051	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7089436	0.83[EUR][1000 genomes]
rs72784264	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72784277	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037958	chr10:24806631-24901088	Weak transcription Strong transcription Genic enhancers Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:24857400-24910400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:24861400-24907400	Weak transcription	Esophagus	oesophagus
3	chr10:24864200-24879200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr10:24864400-24891600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr10:24864600-24880400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr10:24864600-24891400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr10:24866000-24877000	Weak transcription	Fetal Brain Male	brain
8	chr10:24869000-24911600	Weak transcription	Fetal Heart	heart
9	chr10:24869200-24880000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr10:24869200-24907400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:24869400-24892000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:24869400-24893800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr10:24870000-24892200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr10:24870400-24880400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr10:24870400-24893800	Weak transcription	Stomach Mucosa	stomach
16	chr10:24870800-24878600	Weak transcription	Colon Smooth Muscle	Colon
17	chr10:24870800-24879000	Weak transcription	Fetal Thymus	thymus
18	chr10:24870800-24880400	Weak transcription	GM12878-XiMat	blood
19	chr10:24871000-24891600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:24871000-24910800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr10:24871200-24885200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr10:24871200-24894400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
23	chr10:24871600-24877800	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr10:24871600-24891200	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr10:24871600-24893000	Strong transcription	Duodenum Mucosa	Duodenum
26	chr10:24871600-24896800	Strong transcription	Adipose Nuclei	Adipose
27	chr10:24871800-24892000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr10:24872000-24878600	Strong transcription	Brain Cingulate Gyrus	brain
29	chr10:24872000-24883400	Strong transcription	Fetal Brain Female	brain
30	chr10:24872000-24890000	Strong transcription	HUES6 Cell Line	embryonic stem cell
31	chr10:24872000-24892800	Strong transcription	Rectal Mucosa Donor 29	rectum
32	chr10:24872000-24894600	Strong transcription	Liver	Liver
33	chr10:24872000-24894800	Strong transcription	Dnd41	blood
34	chr10:24872200-24877800	Weak transcription	Rectal Smooth Muscle	rectum
35	chr10:24872200-24888600	Strong transcription	HMEC	breast
36	chr10:24872200-24892200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr10:24872400-24877000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr10:24872800-24876800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr10:24872800-24884200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr10:24873000-24878800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr10:24873200-24877800	Strong transcription	Brain Hippocampus Middle	brain
42	chr10:24873200-24879200	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr10:24873200-24885200	Strong transcription	Brain Inferior Temporal Lobe	brain
44	chr10:24873200-24887400	Weak transcription	Thymus	Thymus
45	chr10:24873200-24894400	Strong transcription	Fetal Intestine Large	intestine
46	chr10:24873400-24876800	Strong transcription	Fetal Stomach	stomach
47	chr10:24873400-24877600	Strong transcription	Skeletal Muscle Female	skeletal muscle
48	chr10:24873400-24880800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr10:24873400-24882600	Strong transcription	Sigmoid Colon	Sigmoid Colon
50	chr10:24873400-24883600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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