Variant report

Variant	rs7089436
Chromosome Location	chr10:24904420-24904421
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:24890451..24895085-chr10:24898609..24904693,6	K562	blood:
2	chr10:24902549..24904421-chr10:24911232..24914205,2	K562	blood:

Variant related genes	Relation type
ENSG00000107863	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2367063	0.87[CEU][hapmap];0.88[EUR][1000 genomes]
rs2367064	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2367070	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4748969	1.00[CHB][hapmap]
rs6482428	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs72784264	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72784273	0.83[EUR][1000 genomes]
rs72784277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72784284	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72784286	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72784289	1.00[ASN][1000 genomes]
rs72784290	0.83[ASN][1000 genomes]
rs72793521	1.00[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7089436	C10orf67	cis	parietal	SCAN
rs7089436	NEBL	cis	parietal	SCAN
rs7089436	PRTFDC1	cis	cerebellum	SCAN

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:24857400-24910400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:24861400-24907400	Weak transcription	Esophagus	oesophagus
3	chr10:24869000-24911600	Weak transcription	Fetal Heart	heart
4	chr10:24869200-24907400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:24871000-24910800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:24877800-24911600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr10:24878400-24910400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr10:24879200-24906800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr10:24880800-24911600	Weak transcription	GM12878-XiMat	blood
10	chr10:24881000-24906800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr10:24881400-24922400	Weak transcription	Spleen	Spleen
12	chr10:24882200-24920200	Weak transcription	Gastric	stomach
13	chr10:24886600-24921000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr10:24886800-24912000	Weak transcription	Right Ventricle	heart
15	chr10:24886800-24916600	Weak transcription	Small Intestine	intestine
16	chr10:24887200-24920800	Weak transcription	Aorta	Aorta
17	chr10:24888600-24910200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr10:24889200-24908200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr10:24890000-24911600	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr10:24890000-24923800	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr10:24890400-24907200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr10:24891000-24906600	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr10:24892000-24915200	Weak transcription	HUVEC	blood vessel
24	chr10:24892200-24905200	Weak transcription	Rectal Smooth Muscle	rectum
25	chr10:24892200-24907000	Weak transcription	HepG2	liver
26	chr10:24892200-24907400	Weak transcription	Lung	lung
27	chr10:24892200-24924600	Weak transcription	Psoas Muscle	Psoas
28	chr10:24892400-24905200	Weak transcription	NH-A	brain
29	chr10:24892400-24906800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr10:24892400-24911600	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr10:24892600-24907200	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr10:24892600-24911800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr10:24892600-24912000	Weak transcription	Primary hematopoietic stem cells	blood
34	chr10:24892800-24904800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr10:24892800-24907200	Weak transcription	Brain Hippocampus Middle	brain
36	chr10:24892800-24917800	Weak transcription	Colonic Mucosa	Colon
37	chr10:24893000-24905200	Weak transcription	Duodenum Mucosa	Duodenum
38	chr10:24894400-24906800	Weak transcription	Brain Angular Gyrus	brain
39	chr10:24894400-24907600	Weak transcription	Pancreas	Pancrea
40	chr10:24894400-24908400	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr10:24894400-24911800	Weak transcription	Fetal Brain Male	brain
42	chr10:24894400-24924600	Weak transcription	Ovary	ovary
43	chr10:24894400-24926000	Weak transcription	Stomach Mucosa	stomach
44	chr10:24894600-24906600	Weak transcription	K562	blood
45	chr10:24894600-24906800	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr10:24894600-24907000	Weak transcription	Brain Substantia Nigra	brain
47	chr10:24894600-24907400	Weak transcription	Stomach Smooth Muscle	stomach
48	chr10:24894600-24924400	Weak transcription	Left Ventricle	heart
49	chr10:24894600-24940000	Weak transcription	HSMMtube	muscle
50	chr10:24894800-24922200	Weak transcription	Monocytes-CD14+_RO01746	blood

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