Variant report

Variant	rs72784286
Chromosome Location	chr10:24928259-24928260
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:24928051-24928335	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:24927097..24929727-chr10:25009078..25013052,4	MCF-7	breast:
2	chr10:24909116..24910897-chr10:24927992..24930078,2	MCF-7	breast:
3	chr10:24926297..24929907-chr10:25304441..25307349,3	MCF-7	breast:

Variant related genes	Relation type
RNA5SP305	TF binding region
ENSG00000151023	Chromatin interaction
ENSG00000185875	Chromatin interaction
ENSG00000107863	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2367070	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56214051	0.82[EUR][1000 genomes]
rs7089436	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72784264	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs72784277	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72784284	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72784289	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72784290	0.83[ASN][1000 genomes]
rs72793521	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3332660	chr10:24927196-24930994	Enhancers Weak transcription	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:24894600-24940000	Weak transcription	HSMMtube	muscle
2	chr10:24896600-24936400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr10:24900600-24931800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr10:24906800-24947200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:24907800-24957200	Weak transcription	Esophagus	oesophagus
6	chr10:24908400-24995400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr10:24908800-24940000	Weak transcription	Fetal Muscle Leg	muscle
8	chr10:24912200-24932000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr10:24912600-24935200	Weak transcription	Right Ventricle	heart
10	chr10:24913000-24932000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr10:24913200-24929600	Weak transcription	Adipose Nuclei	Adipose
12	chr10:24917000-24931800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr10:24917200-24932000	Weak transcription	K562	blood
14	chr10:24917400-24931800	Weak transcription	Liver	Liver
15	chr10:24917400-24931800	Weak transcription	Duodenum Mucosa	Duodenum
16	chr10:24919400-24936200	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr10:24920000-24931600	Weak transcription	A549	lung
18	chr10:24920200-24952200	Weak transcription	NHLF	lung
19	chr10:24920200-24957200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr10:24920400-24929400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr10:24920400-24932400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr10:24920400-24936800	Weak transcription	Fetal Intestine Small	intestine
23	chr10:24920800-24939600	Weak transcription	Fetal Stomach	stomach
24	chr10:24920800-24939600	Weak transcription	Pancreas	Pancrea
25	chr10:24921000-24931800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr10:24921000-24932000	Weak transcription	HUVEC	blood vessel
27	chr10:24921000-24940000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr10:24921200-24934800	Weak transcription	Brain Germinal Matrix	brain
29	chr10:24921600-24931600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr10:24921600-24932600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr10:24921800-24931800	Weak transcription	Hela-S3	cervix
32	chr10:24921800-24932000	Weak transcription	NH-A	brain
33	chr10:24922000-24931800	Weak transcription	HepG2	liver
34	chr10:24922000-24932600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr10:24922000-24939600	Weak transcription	Fetal Lung	lung
36	chr10:24922200-24929400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr10:24922200-24932000	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr10:24922200-24932000	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr10:24922200-24932800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr10:24922200-24938200	Weak transcription	Fetal Intestine Large	intestine
41	chr10:24922400-24931600	Weak transcription	NHEK	skin
42	chr10:24922400-24932000	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr10:24922400-24932400	Weak transcription	Small Intestine	intestine
44	chr10:24923800-24929400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr10:24923800-24932000	Weak transcription	HSMM	muscle
46	chr10:24924000-24929400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr10:24924000-24934200	Weak transcription	Dnd41	blood
48	chr10:24924400-24952800	Weak transcription	Fetal Brain Female	brain
49	chr10:24924800-24935200	Weak transcription	Left Ventricle	heart
50	chr10:24925400-24929800	Weak transcription	Fetal Heart	heart

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