Variant report

Variant	rs72793521
Chromosome Location	chr10:25007845-25007846
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:24986984..24989791-chr10:25006847..25009393,2	K562	blood:
2	chr10:24997874..25000612-chr10:25006261..25008162,2	K562	blood:
3	chr10:24979219..24981725-chr10:25007346..25009990,2	K562	blood:
4	chr10:25006251..25008608-chr10:25304637..25306437,2	K562	blood:
5	chr10:25001329..25005009-chr10:25005777..25008854,4	K562	blood:

Variant related genes	Relation type
ENSG00000185875	Chromatin interaction
ENSG00000151023	Chromatin interaction

rs_ID	r²[population]
rs12357257	0.95[EUR][1000 genomes]
rs2367070	1.00[ASN][1000 genomes]
rs7089436	1.00[ASN][1000 genomes]
rs72784264	0.83[ASN][1000 genomes]
rs72784277	1.00[ASN][1000 genomes]
rs72784284	1.00[ASN][1000 genomes]
rs72784286	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72784289	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72784290	0.83[ASN][1000 genomes]

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:24946200-25009000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:24996000-25010000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr10:24996200-25008800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr10:24997000-25008200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr10:25004800-25008000	Enhancers	Ovary	ovary
6	chr10:25004800-25008200	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr10:25005000-25008600	Enhancers	Fetal Heart	heart
8	chr10:25005000-25008800	Enhancers	Colon Smooth Muscle	Colon
9	chr10:25005200-25008800	Enhancers	Liver	Liver
10	chr10:25005200-25009800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:25005600-25009200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr10:25005600-25009200	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr10:25005600-25009600	Weak transcription	Fetal Muscle Trunk	muscle
14	chr10:25005600-25010000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:25005800-25008400	Enhancers	Stomach Mucosa	stomach
16	chr10:25005800-25009800	Weak transcription	Primary hematopoietic stem cells	blood
17	chr10:25005800-25010000	Weak transcription	Esophagus	oesophagus
18	chr10:25006000-25008200	Weak transcription	Fetal Kidney	kidney
19	chr10:25006400-25008000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
20	chr10:25006400-25008800	Flanking Active TSS	A549	lung
21	chr10:25006600-25008000	Flanking Active TSS	Brain Hippocampus Middle	brain
22	chr10:25006600-25008200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr10:25006600-25008200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr10:25006600-25008400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr10:25006800-25008000	Flanking Active TSS	Brain Anterior Caudate	brain
26	chr10:25006800-25008000	Enhancers	HSMM	muscle
27	chr10:25006800-25008400	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr10:25006800-25008600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr10:25006800-25008800	Flanking Active TSS	Fetal Brain Male	brain
30	chr10:25006800-25009200	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr10:25006800-25010200	Weak transcription	Thymus	Thymus
32	chr10:25007000-25008200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr10:25007000-25008400	Flanking Active TSS	HepG2	liver
34	chr10:25007000-25008400	Flanking Active TSS	NH-A	brain
35	chr10:25007000-25008600	Enhancers	Fetal Intestine Large	intestine
36	chr10:25007000-25009000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr10:25007000-25009000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
38	chr10:25007000-25009000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr10:25007000-25009200	Enhancers	Rectal Smooth Muscle	rectum
40	chr10:25007000-25009200	Active TSS	GM12878-XiMat	blood
41	chr10:25007000-25009400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr10:25007000-25009600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr10:25007200-25008200	Enhancers	Fetal Intestine Small	intestine
44	chr10:25007200-25008200	Enhancers	Rectal Mucosa Donor 29	rectum
45	chr10:25007200-25008400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr10:25007200-25009200	Transcr. at gene 5' and 3'	K562	blood
47	chr10:25007200-25010000	Weak transcription	Lung	lung
48	chr10:25007400-25008000	Active TSS	Brain Inferior Temporal Lobe	brain
49	chr10:25007400-25008200	Enhancers	Duodenum Mucosa	Duodenum
50	chr10:25007400-25008400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell

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