Variant report

Variant	esv2477708
Chromosome Location	chr9:3523180-3524864
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr9:3524513-3524939	HepG2	liver:	n/a	n/a
2	ARID3A	chr9:3524387-3524926	K562	blood:	n/a	n/a
3	ATF2	chr9:3524505-3525038	GM12878	blood:	n/a	n/a
4	BCLAF1	chr9:3524511-3524995	GM12878	blood:	n/a	n/a
5	BCLAF1	chr9:3524371-3524958	GM12878	blood:	n/a	chr9:3524461-3524470
6	BHLHE40	chr9:3524430-3524925	GM12878	blood:	n/a	n/a
7	CHD1	chr9:3523733-3524024	GM12878	blood:	n/a	n/a
8	CHD1	chr9:3524393-3527671	IMR90	lung:	n/a	chr9:3524990-3525000 chr9:3526447-3526457 chr9:3526442-3526452
9	CHD1	chr9:3524542-3529139	GM12878	blood:	n/a	chr9:3524990-3525000 chr9:3526447-3526457 chr9:3526442-3526452
10	CHD2	chr9:3524587-3524901	GM12878	blood:	n/a	n/a
11	CUX1	chr9:3524568-3524880	GM12878	blood:	n/a	n/a
12	CUX1	chr9:3524347-3524823	K562	blood:	n/a	n/a
13	CUX1	chr9:3523984-3524168	GM12878	blood:	n/a	n/a
14	E2F4	chr9:3523842-3524121	MCF10A-Er-Src	breast:	n/a	n/a
15	EBF1	chr9:3524479-3524806	GM12878	blood:	n/a	n/a
16	ELK1	chr9:3524623-3524937	GM12878	blood:	n/a	n/a
17	EP300	chr9:3524612-3524959	GM12878	blood:	n/a	n/a
18	EP300	chr9:3524612-3524859	GM12878	blood:	n/a	n/a
19	EP300	chr9:3524433-3524885	GM12878	blood:	n/a	chr9:3524456-3524470
20	EP300	chr9:3524388-3524938	K562	blood:	n/a	chr9:3524456-3524470
21	ETS1	chr9:3524558-3525004	GM12878	blood:	n/a	chr9:3524806-3524815 chr9:3524989-3525000 chr9:3524987-3524998
22	FOS	chr9:3524793-3524817	MCF10A-Er-Src	breast:	n/a	n/a
23	FOS	chr9:3524776-3524817	MCF10A-Er-Src	breast:	n/a	n/a
24	FOS	chr9:3522940-3523309	MCF10A-Er-Src	breast:	n/a	n/a
25	FOXA1	chr9:3524590-3524945	HepG2	liver:	n/a	n/a
26	FOXA1	chr9:3524643-3524935	HepG2	liver:	n/a	n/a
27	FOXA2	chr9:3524611-3525010	A549	lung:	n/a	n/a
28	FOXA2	chr9:3524621-3524856	HepG2	liver:	n/a	n/a
29	FOXA2	chr9:3524518-3525050	A549	lung:	n/a	n/a
30	IRF1	chr9:3524351-3524886	K562	blood:	n/a	chr9:3524710-3524730 chr9:3524457-3524471 chr9:3524459-3524472 chr9:3524711-3524728 chr9:3524712-3524726 chr9:3524461-3524471 chr9:3524712-3524723
31	IRF1	chr9:3524340-3524919	K562	blood:	n/a	chr9:3524710-3524730 chr9:3524457-3524471 chr9:3524459-3524472 chr9:3524711-3524728 chr9:3524712-3524726 chr9:3524461-3524471 chr9:3524712-3524723
32	IRF1	chr9:3523747-3524078	K562	blood:	n/a	n/a
33	JUND	chr9:3524583-3524897	K562	blood:	n/a	n/a
34	MAX	chr9:3524534-3524913	GM12878	blood:	n/a	chr9:3524737-3524747
35	MAX	chr9:3524473-3524912	NB4	blood:	n/a	chr9:3524737-3524747
36	MAZ	chr9:3524511-3524898	HepG2	liver:	n/a	chr9:3524737-3524747
37	MAZ	chr9:3523521-3523682	GM12878	blood:	n/a	n/a
38	MAZ	chr9:3524529-3527468	GM12878	blood:	n/a	chr9:3524987-3524997 chr9:3524737-3524747 chr9:3526414-3526424
39	MAZ	chr9:3524552-3527286	K562	blood:	n/a	chr9:3524987-3524997 chr9:3524737-3524747 chr9:3526414-3526424
40	MAZ	chr9:3524291-3527504	IMR90	lung:	n/a	chr9:3524987-3524997 chr9:3524737-3524747 chr9:3526414-3526424
41	MAZ	chr9:3524576-3524904	Hela-S3	cervix:	n/a	chr9:3524737-3524747
42	MXI1	chr9:3523749-3523861	GM12878	blood:	n/a	n/a
43	MXI1	chr9:3524347-3525182	GM12878	blood:	n/a	n/a
44	MXI1	chr9:3524072-3528253	SK-N-SH	brain:	n/a	chr9:3525863-3525878
45	MYC	chr9:3524135-3524765	MCF10A-Er-Src	breast:	n/a	chr9:3524737-3524747
46	MYC	chr9:3524312-3524913	MCF10A-Er-Src	breast:	n/a	chr9:3524737-3524747
47	MYC	chr9:3524588-3525302	K562	blood:	n/a	chr9:3524987-3524997 chr9:3524737-3524747
48	NFIC	chr9:3524432-3525017	GM12878	blood:	n/a	n/a
49	NFYA	chr9:3523335-3523572	Hela-S3	cervix:	n/a	n/a
50	PBX3	chr9:3524646-3524850	GM12878	blood:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:3524695-3524745	PANC-1	pancreas:	n/a
2	chr9:3524695-3524745	NHBE	bronchial:	n/a
3	chr9:3524695-3524745	GM12892	blood:	n/a
4	chr9:3524695-3524745	SK-N-MC	brain:	n/a
5	chr9:3524695-3524745	HRE	kidney:	n/a
6	chr9:3524695-3524745	HCPEpiC	choroid plexus:	n/a
7	chr9:3524695-3524745	GM06990	blood:	n/a
8	chr9:3524695-3524745	Jurkat	blood:	n/a
9	chr9:3524695-3524745	HEK293	kidney:	embryo
10	chr9:3524695-3524745	GM19239	blood:	n/a
11	chr9:3524695-3524745	ECC-1	luminal epithelium:	n/a
12	chr9:3524695-3524745	Hela-S3	cervix:	n/a
13	chr9:3524695-3524745	HL-60	blood:	n/a
14	chr9:3524695-3524745	U87	brain:	n/a
15	chr9:3524695-3524745	HUVEC	blood vessel:	n/a
16	chr9:3524695-3524745	GM12891	blood:	n/a
17	chr9:3524695-3524745	MCF-7	breast:	n/a
18	chr9:3524695-3524745	HRCEpiC	kidney:	n/a
19	chr9:3524695-3524745	HEEpiC	esophagus:	n/a
20	chr9:3524695-3524745	CMK	blood:	n/a
21	chr9:3524695-3524745	BE2_C	brain:	n/a
22	chr9:3524695-3524745	AG09309	skin:	n/a
23	chr9:3524695-3524745	AG09319	gingival:	n/a
24	chr9:3524695-3524745	HCM	heart:	n/a
25	chr9:3524695-3524745	AG10803	skin:	n/a
26	chr9:3524695-3524745	HNPCEpiC	eye:	n/a
27	chr9:3524695-3524745	SK-N-SH	brain:	n/a
28	chr9:3524695-3524745	HepG2	liver:	n/a
29	chr9:3524695-3524745	K562	blood:	n/a
30	chr9:3524695-3524745	HCT-116	colon:	n/a
31	chr9:3524695-3524745	SKMC	muscle:	n/a
32	chr9:3524695-3524745	Hepatocyte	liver:	n/a
33	chr9:3524695-3524745	T-47D	breast:	n/a
34	chr9:3524695-3524745	HRPEpiC	eye:	n/a
35	chr9:3524695-3524745	SAEC	small airway:	n/a
36	chr9:3524695-3524745	RPTEC	kidney:	n/a
37	chr9:3524695-3524745	MCF10A-Er-Src	breast:	n/a
38	chr9:3524695-3524745	H1-hESC	embryonic stem cell:	embryo
39	chr9:3524695-3524745	PrEC	prostate:	n/a
40	chr9:3524695-3524745	NB4	blood:	n/a
41	chr9:3524695-3524745	PFSK-1	brain:	n/a
42	chr9:3524695-3524745	BJ	skin:	n/a
43	chr9:3524695-3524745	NHDF-neo	bronchial:	n/a
44	chr9:3524695-3524745	LNCaP	prostate:	n/a
45	chr9:3524695-3524745	HPAEpiC	pulmonary alveolar:	n/a
46	chr9:3524695-3524745	HMEC	breast:	n/a
47	chr9:3524695-3524745	HAEpiC	amniotic membrane:	n/a
48	chr9:3524695-3524745	Caco-2	colon:	n/a
49	chr9:3524695-3524745	IMR90	lung:	fetal
50	chr9:3524695-3524745	AG04450	lung:	fetal

No.	Distal block	Cell Line	Cell type
1	chr9:2842064..2844768-chr9:3524803..3527756,2	K562	blood:
2	chr9:3489743..3491847-chr9:3522486..3524735,2	K562	blood:
3	chr9:3510896..3512703-chr9:3523478..3525761,2	MCF-7	breast:
4	chr10:102106174..102108019-chr9:3523293..3526279,2	MCF-7	breast:
5	chr9:3501077..3503324-chr9:3523015..3525744,2	MCF-7	breast:
6	chr9:3466442..3469407-chr9:3524530..3526691,2	K562	blood:

Variant related genes	Relation type
ENSG00000232104	TF binding region
ENSG00000232104	CpG island
ENSG00000203286	chromatin interactions
ENSG00000080608	chromatin interactions
ENSG00000099194	chromatin interactions

Extended variants
information (count: 65 )
Associated
traits (count: 102 )

Variant overlapped rSNPs/rCNVs (count:65 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs528183291	chr9:3523182-3523183	Weak transcription Active TSS Flanking Active TSS Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
2	rs547879788	chr9:3523195-3523196	Weak transcription Active TSS Flanking Active TSS Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
3	rs568007591	chr9:3523198-3523199	Weak transcription Active TSS Flanking Active TSS Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
4	rs536961142	chr9:3523199-3523200	Weak transcription Active TSS Flanking Active TSS Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
5	rs376157526	chr9:3523217-3523218	Weak transcription Active TSS Flanking Active TSS Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
6	rs189464704	chr9:3523229-3523230	Weak transcription Active TSS Flanking Active TSS Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
7	rs550864223	chr9:3523255-3523256	Weak transcription Active TSS Flanking Active TSS Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
8	rs4741834	chr9:3523286-3523287	Weak transcription Active TSS Flanking Active TSS Enhancers	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs577708722	chr9:3523336-3523337	Weak transcription Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs539680715	chr9:3523348-3523349	Weak transcription Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs372577665	chr9:3523352-3523353	Weak transcription Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs370804502	chr9:3523384-3523385	Weak transcription Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs553195736	chr9:3523411-3523412	Weak transcription Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs572495066	chr9:3523424-3523425	Weak transcription Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs78126971	chr9:3523426-3523427	Weak transcription Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs543943295	chr9:3523505-3523506	Weak transcription Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs554677769	chr9:3523507-3523508	Weak transcription Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs35237880	chr9:3523541-3523542	Weak transcription Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs531325107	chr9:3523562-3523563	Weak transcription Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs543730847	chr9:3523577-3523578	Weak transcription Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs148793375	chr9:3523595-3523596	Weak transcription Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs577110412	chr9:3523612-3523613	Weak transcription Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs546032916	chr9:3523718-3523719	Weak transcription Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs559848912	chr9:3523807-3523808	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs577534490	chr9:3523852-3523853	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs180985052	chr9:3523877-3523878	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs116735273	chr9:3523953-3523954	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs143357963	chr9:3523956-3523957	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs550580520	chr9:3523969-3523970	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs185898940	chr9:3523994-3523995	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs147537016	chr9:3524051-3524052	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs35282949	chr9:3524066-3524067	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs397894320	chr9:3524070-3524071	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs546483385	chr9:3524081-3524082	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs143628325	chr9:3524082-3524083	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs189916354	chr9:3524086-3524087	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs534824878	chr9:3524134-3524135	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
38	rs140042598	chr9:3524169-3524170	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
39	rs568444885	chr9:3524233-3524234	Weak transcription Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
40	rs537085679	chr9:3524249-3524250	Weak transcription Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
41	rs546372240	chr9:3524285-3524286	Weak transcription Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
42	rs546047323	chr9:3524426-3524427	Active TSS Weak transcription Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
43	rs114392672	chr9:3524442-3524443	Active TSS Weak transcription Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
44	rs573356692	chr9:3524454-3524455	Active TSS Weak transcription Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
45	rs181183663	chr9:3524458-3524459	Active TSS Weak transcription Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs145571540	chr9:3524488-3524489	Active TSS Weak transcription Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs561857543	chr9:3524505-3524506	Active TSS Weak transcription Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
48	rs530614208	chr9:3524547-3524548	Active TSS Weak transcription Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
49	rs371717606	chr9:3524548-3524549	Active TSS Weak transcription Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
50	rs577224517	chr9:3524556-3524557	Active TSS Weak transcription Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:102)

Disease	PMID	Source
Gastric cancer	16715143	CNVD
Glioblastoma multiforme	22286061	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Intracranial aneurysm	16715129	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Disorders of sex development	22290220	CNVD
Glioblastoma multiforme	21080181	CNVD
Sudden cardiac death	19188705	CNVD
Non-small cell lung cancer	21829676	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Non-small cell lung cancer	21952639	CNVD
Disorders of sex development	21048976	CNVD
Neuroblastoma	18923191	CNVD
Intellectual disability	22102821	CNVD
abnormal development	18461090	CNVD
Honadal dysgenesis	21048976	CNVD
Medulloblastoma	21979893	CNVD
Lung cancer	16740712	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Chronic myeloid leukemia	21384125	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Developmental delay	21147756	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Lung cancer	18438408	CNVD
Autism	20531469	CNVD
XY gonadal dysgenesis	20685758	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Myelodysplastic syndrome	21251322	CNVD
Breast cancer	21785460	CNVD
Prostate cancer	18632612	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21364760	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Myelofibrosis	22110671	CNVD
Developmental delay	21373258	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Hepatocellular carcinoma	18803288	CNVD
Autism	20808228	CNVD
Autism	20858261	CNVD
Epilepsy	20858261	CNVD
Mental retardation	20858261	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD

Chromatin state (count:266 , 50 per page) page: 1 2 3 4 5 6

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:3474400-3524400	Weak transcription	Thymus	Thymus
2	chr9:3480600-3524600	Weak transcription	Left Ventricle	heart
3	chr9:3503000-3524400	Weak transcription	Fetal Thymus	thymus
4	chr9:3509000-3523800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr9:3509000-3523800	Weak transcription	HSMM	muscle
6	chr9:3509000-3524400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr9:3509400-3523600	Weak transcription	Primary B cells from cord blood	blood
8	chr9:3511800-3523600	Weak transcription	Fetal Lung	lung
9	chr9:3512000-3524200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr9:3512000-3524400	Weak transcription	Primary hematopoietic stem cells	blood
11	chr9:3512000-3525000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr9:3512200-3523200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr9:3513800-3524400	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr9:3515600-3525000	Weak transcription	Small Intestine	intestine
15	chr9:3517000-3523400	Weak transcription	HUVEC	blood vessel
16	chr9:3517000-3524600	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr9:3517400-3523600	Weak transcription	Fetal Brain Female	brain
18	chr9:3517800-3523200	Weak transcription	Colon Smooth Muscle	Colon
19	chr9:3517800-3524000	Weak transcription	NHDF-Ad	bronchial
20	chr9:3518000-3524400	Weak transcription	Primary B cells from peripheral blood	blood
21	chr9:3518200-3523600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr9:3518200-3524400	Weak transcription	Brain Cingulate Gyrus	brain
23	chr9:3519400-3524400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr9:3520800-3524400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr9:3520800-3524400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr9:3520800-3524600	Weak transcription	Lung	lung
27	chr9:3521000-3524000	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr9:3521000-3524400	Weak transcription	Fetal Kidney	kidney
29	chr9:3521000-3524600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr9:3521000-3524800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr9:3521400-3524600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr9:3521600-3523800	Enhancers	Dnd41	blood
33	chr9:3521800-3523800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr9:3521800-3523800	Enhancers	Primary T helper cells PMA-I stimulated	--
35	chr9:3521800-3524000	Enhancers	Primary T helper cells fromperipheralblood	blood
36	chr9:3521800-3524200	Enhancers	Primary T cells from cord blood	blood
37	chr9:3521800-3529000	Active TSS	GM12878-XiMat	blood
38	chr9:3522000-3523200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr9:3522000-3523400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr9:3522000-3524200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
41	chr9:3522000-3524200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
42	chr9:3522000-3524200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
43	chr9:3522200-3523200	Enhancers	Brain Hippocampus Middle	brain
44	chr9:3522200-3523200	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
45	chr9:3522200-3523600	Enhancers	Cortex derived primary cultured neurospheres	brain
46	chr9:3522200-3524000	Enhancers	iPS-18 Cell Line	embryonic stem cell
47	chr9:3522200-3524200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
48	chr9:3522200-3524400	Enhancers	Primary T killer memory cells from peripheral blood	blood
49	chr9:3522200-3524600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
50	chr9:3522400-3523200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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