Variant report

Variant rs397894320
Chromosome Location chr9:3524070-3524071
allele -/AT
Outlinks Ensembl   UCSC
Chromatin state (count:82 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr9:3474400-3524400 Weak transcription Thymus Thymus
2 chr9:3480600-3524600 Weak transcription Left Ventricle heart
3 chr9:3503000-3524400 Weak transcription Fetal Thymus thymus
4 chr9:3509000-3524400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
5 chr9:3512000-3524200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
6 chr9:3512000-3524400 Weak transcription Primary hematopoietic stem cells blood
7 chr9:3512000-3525000 Weak transcription ES-WA7 Cell Line embryonic stem cell
8 chr9:3513800-3524400 Weak transcription Primary monocytes fromperipheralblood blood
9 chr9:3515600-3525000 Weak transcription Small Intestine intestine
10 chr9:3517000-3524600 Weak transcription Sigmoid Colon Sigmoid Colon
11 chr9:3518000-3524400 Weak transcription Primary B cells from peripheral blood blood
12 chr9:3518200-3524400 Weak transcription Brain Cingulate Gyrus brain
13 chr9:3519400-3524400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
14 chr9:3520800-3524400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
15 chr9:3520800-3524400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
16 chr9:3520800-3524600 Weak transcription Lung lung
17 chr9:3521000-3524400 Weak transcription Fetal Kidney kidney
18 chr9:3521000-3524600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
19 chr9:3521000-3524800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
20 chr9:3521400-3524600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
21 chr9:3521800-3524200 Enhancers Primary T cells from cord blood blood
22 chr9:3521800-3529000 Active TSS GM12878-XiMat blood
23 chr9:3522000-3524200 Enhancers Primary T helper memory cells from peripheral blood 1 blood
24 chr9:3522000-3524200 Enhancers Primary T regulatory cells fromperipheralblood blood
25 chr9:3522000-3524200 Enhancers Primary T killer naive cells fromperipheralblood blood
26 chr9:3522200-3524200 Enhancers Primary T helper naive cells fromperipheralblood blood
27 chr9:3522200-3524400 Enhancers Primary T killer memory cells from peripheral blood blood
28 chr9:3522200-3524600 Enhancers Primary T helper memory cells from peripheral blood 2 blood
29 chr9:3522400-3524400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
30 chr9:3522600-3530200 Active TSS K562 blood
31 chr9:3522800-3527400 Active TSS H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
32 chr9:3523000-3526800 Active TSS NH-A brain
33 chr9:3523000-3527200 Active TSS Brain Anterior Caudate brain
34 chr9:3523200-3524200 Enhancers iPS-15b Cell Line embryonic stem cell
35 chr9:3523200-3524200 Weak transcription Brain Hippocampus Middle brain
36 chr9:3523200-3524400 Enhancers Colon Smooth Muscle Colon
37 chr9:3523200-3524800 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
38 chr9:3523200-3525000 Active TSS Brain Germinal Matrix brain
39 chr9:3523200-3527000 Active TSS Skeletal Muscle Male skeletal muscle
40 chr9:3523200-3527200 Active TSS Ganglion Eminence derived primary cultured neurospheres brain
41 chr9:3523200-3527200 Active TSS Brain Inferior Temporal Lobe brain
42 chr9:3523400-3524200 Active TSS HUES64 Cell Line embryonic stem cell
43 chr9:3523400-3524200 Enhancers HUVEC blood vessel
44 chr9:3523600-3524200 Flanking Active TSS iPS-20b Cell Line embryonic stem cell
45 chr9:3523600-3524400 Enhancers Primary B cells from cord blood blood
46 chr9:3523600-3524400 Enhancers Fetal Lung lung
47 chr9:3523600-3525400 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
48 chr9:3523600-3528200 Active TSS Pancreatic Islets Pancreatic Islet
49 chr9:3523600-3528600 Active TSS hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
50 chr9:3523800-3524200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived

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