Variant report

Variant	esv2492571
Chromosome Location	chr10:25637591-25639384
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25606928..25608702-chr10:25636326..25639003,2	MCF-7	breast:

Extended variants
information (count: 72 )
Associated
traits (count: 44 )

Variant overlapped rSNPs/rCNVs (count:72 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs74123865	chr10:25637599-25637600	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs7915893	chr10:25637606-25637607	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs184878362	chr10:25637626-25637627	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs187222847	chr10:25637662-25637663	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs56982575	chr10:25637716-25637717	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs58180203	chr10:25637721-25637722	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs537863025	chr10:25637722-25637723	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs142951923	chr10:25637730-25637731	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs555197618	chr10:25637774-25637775	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs76469433	chr10:25637779-25637780	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs146135983	chr10:25637789-25637790	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs56845226	chr10:25637810-25637811	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs576993116	chr10:25637811-25637812	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs192134506	chr10:25637821-25637822	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs562579103	chr10:25637835-25637836	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs183859818	chr10:25637866-25637867	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs74123866	chr10:25637871-25637872	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs565530897	chr10:25637874-25637875	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs189937187	chr10:25637953-25637954	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs57417993	chr10:25637961-25637962	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs1413398	chr10:25637975-25637976	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs570283426	chr10:25638016-25638017	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs181390579	chr10:25638030-25638031	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs552214544	chr10:25638121-25638122	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs79198543	chr10:25638122-25638123	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs569256960	chr10:25638160-25638161	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs2795044	chr10:25638181-25638182	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs554706461	chr10:25638208-25638209	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs58857830	chr10:25638220-25638221	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs74123867	chr10:25638239-25638240	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs554530260	chr10:25638254-25638255	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs568659107	chr10:25638270-25638271	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs546421365	chr10:25638271-25638272	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs142539364	chr10:25638296-25638297	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs112606107	chr10:25638315-25638316	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs150963363	chr10:25638360-25638361	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs551298219	chr10:25638369-25638370	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs546250373	chr10:25638425-25638426	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs1773652	chr10:25638426-25638427	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs12261120	chr10:25638433-25638434	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs533822230	chr10:25638439-25638440	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs551156772	chr10:25638449-25638450	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs369528441	chr10:25638510-25638511	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs564051216	chr10:25638530-25638531	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs547702711	chr10:25638543-25638544	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs548543670	chr10:25638649-25638650	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs149676143	chr10:25638684-25638685	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs77293307	chr10:25638714-25638715	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs567654202	chr10:25638901-25638902	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs145607576	chr10:25638906-25638907	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:44)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21364760	CNVD
Behavioral abnormalities	21522184	CNVD
Dysmorphic features	21522184	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Myelofibrosis	22110671	CNVD
Autism	21439084	CNVD
Maculopathy	20981449	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Glioblastoma multiforme	21525872	CNVD
Cancer	20164919	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25632400-25642600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr10:25639200-25640200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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