Variant report

Variant	esv2572731
Chromosome Location	chr1:185801339-185802772
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:185801576..185804195-chr1:185819606..185821997,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 86 )

Variant overlapped rSNPs/rCNVs (count:44 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs190042409	chr1:185801341-185801342	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs145882398	chr1:185801366-185801367	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs113909976	chr1:185801377-185801378	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs7520805	chr1:185801415-185801416	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs56383996	chr1:185801558-185801559	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs552178903	chr1:185801563-185801564	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs558091262	chr1:185801613-185801614	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs112849248	chr1:185801654-185801655	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs570444272	chr1:185801697-185801698	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs537518219	chr1:185801823-185801824	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs576745395	chr1:185801835-185801836	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs200139990	chr1:185801860-185801861	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs556228803	chr1:185801886-185801887	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs575889279	chr1:185801926-185801927	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs575711086	chr1:185801974-185801975	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs181466332	chr1:185802006-185802007	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs185709497	chr1:185802018-185802019	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs573179873	chr1:185802036-185802037	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs540560726	chr1:185802106-185802107	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs538495848	chr1:185802110-185802111	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs558710533	chr1:185802159-185802160	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs534579510	chr1:185802160-185802161	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs564900567	chr1:185802161-185802162	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs374627640	chr1:185802162-185802163	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs577188804	chr1:185802203-185802204	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs544332946	chr1:185802213-185802214	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs376607155	chr1:185802276-185802277	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs530172911	chr1:185802279-185802280	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs368674029	chr1:185802326-185802327	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs57647869	chr1:185802345-185802346	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs58375153	chr1:185802351-185802352	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs72733236	chr1:185802423-185802424	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs2129125	chr1:185802471-185802472	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs147809194	chr1:185802472-185802473	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs537860088	chr1:185802481-185802482	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs114067648	chr1:185802515-185802516	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs188860520	chr1:185802576-185802577	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs116460571	chr1:185802602-185802603	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs113249729	chr1:185802609-185802610	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs181229117	chr1:185802629-185802630	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs115939181	chr1:185802634-185802635	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs2200267	chr1:185802650-185802651	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs375581133	chr1:185802674-185802675	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs551397950	chr1:185802759-185802760	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:86)

Disease	PMID	Source
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	21637470	CNVD
HIV/AIDS	22032296	CNVD
Schizophrenia	19415332	CNVD
Autism	22495311	CNVD
Liposarcoma	21253554	CNVD
Burkitt''s lymphoma	18698080	CNVD
Melanoma	18172304	CNVD
Rett syndrome	21593744	CNVD
Cancer	20164919	CNVD
Medulloblastoma	21979893	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	17133270	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Non-small cell lung cancer	21044232	CNVD
Cervical cancer	21063398	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	20632083	CNVD
Endometrial cancer	22040021	CNVD
Ewing''s sarcoma	21437220	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	21080181	CNVD
Hepatocellular carcinoma	22174799	CNVD
Medulloblastoma	21292688	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	21264507	CNVD
Multiple myeloma	21628407	CNVD
Cancer	16751803	CNVD
Prostate cancer	16705090	CNVD
Neuroblastoma	19435921	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16461572	CNVD
Intracranial tumor	16823260	CNVD
Medulloblastoma	18056178	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Neuroblastoma	21899760	CNVD
Ovarian neoplasms	16753589	CNVD
Glioblastoma multiforme	17002787	CNVD
Breast cancer	21858162	CNVD
Non-small cell lung cancer	21385341	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Breast cancer	16608533	CNVD
Ewing''s sarcoma	22429812	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Hepatocellular carcinoma	18803288	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17001317	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	21251322	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Acute myeloid leukemia	20729466	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Testicular germ cell tumor	18059402	CNVD
Ependymoma	18628472	CNVD
Leukemia	18628472	CNVD
Neuroblastoma	18923191	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Ewing''s sarcoma	17952124	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21509527	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Metanephric adenoma	20802469	CNVD
Melanoma	20688739	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21611746	CNVD
Myelofibrosis	22110671	CNVD
primary effusion lymphomas	17116491	CNVD
Breast cancer	17393978	CNVD
Hepatocellular carcinoma	16750200	CNVD
Barrett''s syndrome	19417022	CNVD
Schizophrenia	19197363	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	17899364	CNVD
Non-small cell lung cancer	19010865	CNVD
Mental retardation	17847001	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185795800-185803400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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