Variant report

Variant	rs58375153
Chromosome Location	chr1:185802351-185802352
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs28477118	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs28510615	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs55731570	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56100961	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs56347630	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs56881574	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs59024653	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59660733	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60307030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6676349	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73060487	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73070527	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73072012	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73072023	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73072049	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73072063	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73072067	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73072075	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74135337	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs74135346	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs74135359	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs74135362	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs74135365	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7520805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7544394	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7554996	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	esv2572731	chr1:185801339-185802772	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185795800-185803400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links