Variant report

Variant	esv275087
Chromosome Location	chr10:89632510-89642848
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr10:89638569-89639130	K562	blood:	n/a	n/a
2	ATF1	chr10:89638697-89639079	K562	blood:	n/a	n/a
3	BCLAF1	chr10:89638664-89639157	K562	blood:	n/a	n/a
4	BHLHE40	chr10:89632799-89632804	K562	blood:	n/a	n/a
5	CBX3	chr10:89638725-89639060	K562	blood:	n/a	n/a
6	CBX3	chr10:89638705-89639172	K562	blood:	n/a	n/a
7	CCNT2	chr10:89638737-89639000	K562	blood:	n/a	chr10:89638935-89638955
8	CEBPB	chr10:89635944-89636282	K562	blood:	n/a	chr10:89636111-89636122 chr10:89636113-89636122 chr10:89636166-89636178 chr10:89636112-89636123
9	CEBPB	chr10:89635936-89636307	Hela-S3	cervix:	n/a	chr10:89636111-89636122 chr10:89636113-89636122 chr10:89636166-89636178 chr10:89636112-89636123
10	CEBPB	chr10:89637644-89637833	Hela-S3	cervix:	n/a	chr10:89637754-89637767 chr10:89637754-89637767 chr10:89637755-89637766 chr10:89637754-89637765
11	CEBPB	chr10:89638751-89639193	K562	blood:	n/a	n/a
12	CEBPB	chr10:89635960-89636273	HepG2	liver:	n/a	chr10:89636111-89636122 chr10:89636113-89636122 chr10:89636166-89636178 chr10:89636112-89636123
13	CEBPB	chr10:89635900-89636337	A549	lung:	n/a	chr10:89636111-89636122 chr10:89636113-89636122 chr10:89636166-89636178 chr10:89636112-89636123
14	CEBPB	chr10:89638870-89639070	K562	blood:	n/a	n/a
15	CEBPB	chr10:89637619-89637930	K562	blood:	n/a	chr10:89637754-89637767 chr10:89637754-89637767 chr10:89637755-89637766 chr10:89637754-89637765
16	CEBPB	chr10:89637658-89637806	HepG2	liver:	n/a	chr10:89637754-89637767 chr10:89637754-89637767 chr10:89637755-89637766 chr10:89637754-89637765
17	CEBPB	chr10:89637645-89637830	H1-hESC	embryonic stem cell:	n/a	chr10:89637754-89637767 chr10:89637754-89637767 chr10:89637755-89637766 chr10:89637754-89637765
18	CEBPB	chr10:89635970-89636287	IMR90	lung:	n/a	chr10:89636111-89636122 chr10:89636113-89636122 chr10:89636166-89636178 chr10:89636112-89636123
19	CEBPB	chr10:89635985-89636266	A549	lung:	n/a	chr10:89636111-89636122 chr10:89636113-89636122 chr10:89636166-89636178 chr10:89636112-89636123
20	CEBPB	chr10:89637633-89637831	IMR90	lung:	n/a	chr10:89637754-89637767 chr10:89637754-89637767 chr10:89637755-89637766 chr10:89637754-89637765
21	CEBPB	chr10:89638808-89639206	K562	blood:	n/a	n/a
22	CEBPD	chr10:89638647-89639113	K562	blood:	n/a	n/a
23	CTCF	chr10:89633200-89633350	SAEC	small airway:	n/a	n/a
24	CUX1	chr10:89638165-89638309	K562	blood:	n/a	n/a
25	EP300	chr10:89642117-89642896	SK-N-SH	brain:	n/a	chr10:89642458-89642472 chr10:89642588-89642602
26	EP300	chr10:89633096-89633126	GM12878	blood:	n/a	n/a
27	EP300	chr10:89642233-89642606	SK-N-SH_RA	brain:	n/a	chr10:89642458-89642472 chr10:89642588-89642602
28	EP300	chr10:89638631-89639190	K562	blood:	n/a	n/a
29	EP300	chr10:89638792-89639146	K562	blood:	n/a	n/a
30	FOS	chr10:89636048-89636288	MCF10A-Er-Src	breast:	n/a	n/a
31	FOS	chr10:89635979-89636288	MCF10A-Er-Src	breast:	n/a	n/a
32	FOS	chr10:89636088-89636262	MCF10A-Er-Src	breast:	n/a	n/a
33	GATA1	chr10:89638581-89639416	PBDE	blood:	n/a	chr10:89638938-89638955
34	GATA2	chr10:89638696-89639218	K562	blood:	n/a	chr10:89638938-89638955
35	GATA3	chr10:89636847-89636903	SH-SY5Y	brain:	n/a	n/a
36	GATA3	chr10:89642140-89642688	SK-N-SH	brain:	n/a	chr10:89642451-89642462
37	GATA3	chr10:89642400-89642604	SH-SY5Y	brain:	n/a	chr10:89642451-89642462
38	HEY1	chr10:89639047-89639283	K562	blood:	n/a	n/a
39	IRF1	chr10:89638489-89639075	K562	blood:	n/a	n/a
40	IRF1	chr10:89638350-89639080	K562	blood:	n/a	n/a
41	IRF1	chr10:89635822-89635879	K562	blood:	n/a	n/a
42	JUN	chr10:89638648-89638982	K562	blood:	n/a	n/a
43	JUND	chr10:89638713-89639104	K562	blood:	n/a	n/a
44	JUND	chr10:89637719-89637793	HepG2	liver:	n/a	n/a
45	KAP1	chr10:89638686-89639105	U2OS	brain:	n/a	n/a
46	MAFF	chr10:89638426-89638793	HepG2	liver:	n/a	chr10:89638614-89638632
47	MAFF	chr10:89638433-89638979	K562	blood:	n/a	chr10:89638614-89638632
48	MAFK	chr10:89638433-89638803	HepG2	liver:	n/a	chr10:89638615-89638630
49	MAFK	chr10:89641980-89642040	HepG2	liver:	n/a	n/a
50	MAFK	chr10:89638306-89638946	H1-hESC	embryonic stem cell:	n/a	chr10:89638615-89638630

No.	Distal block	Cell Line	Cell type
1	chr10:89631936..89633868-chr10:90147243..90149574,2	MCF-7	breast:
2	chr10:89630597..89633078-chr10:89635123..89637172,2	MCF-7	breast:
3	chr10:89630597..89633078-chr10:89635123..89637172,2	MCF-7	breast:
4	chr10:89620447..89623271-chr10:89637766..89641518,4	MCF-7	breast:
5	chr10:89632106..89634679-chr10:89635218..89637761,3	MCF-7	breast:
6	chr10:89641632..89644559-chr10:89685193..89686750,2	K562	blood:
7	chr10:89639384..89642070-chr10:89695863..89697662,2	K562	blood:
8	chr10:89627960..89634049-chr10:89634179..89640530,8	K562	blood:
9	chr10:89639033..89641731-chr10:89644524..89647018,2	K562	blood:
10	chr10:89632106..89634679-chr10:89635218..89637761,3	MCF-7	breast:
11	chr10:89628331..89631690-chr10:89632886..89636887,5	MCF-7	breast:
12	chr10:89621343..89626061-chr10:89634894..89638873,7	K562	blood:
13	chr10:89642392..89644637-chr10:89652677..89655610,2	MCF-7	breast:
14	chr10:89576887..89579810-chr10:89632591..89635220,2	K562	blood:
15	chr10:89638682..89641996-chr10:89653428..89657390,3	K562	blood:
16	chr10:89629893..89635065-chr10:89636010..89640351,6	K562	blood:
17	chr10:89619679..89625045-chr10:89627844..89633340,9	K562	blood:
18	chr10:89640838..89642681-chr10:89647239..89649894,3	K562	blood:
19	chr10:89623575..89625821-chr10:89638981..89641950,2	K562	blood:
20	chr10:89627048..89629019-chr10:89631649..89634484,2	K562	blood:
21	chr10:89622936..89626124-chr10:89632043..89636497,5	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PAPSS2-2	chr10:89638449-89638780	ENSG00000224745.1
2	lnc-PAPSS2-2	chr10:89640057-89640184	ENSG00000224745.1
3	lnc-PAPSS2-2	chr10:89639829-89639867	ENSG00000224745.1

Variant related genes	Relation type
ENSG00000224745	TF binding region
ENSG00000171862	chromatin interactions
ENSG00000224745	chromatin interactions
ENSG00000223820	chromatin interactions
ENSG00000138138	chromatin interactions
ENSG00000227268	chromatin interactions

Extended variants
information (count: 361 )
Associated
traits (count: 119 )

Variant overlapped rSNPs/rCNVs (count:361 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs568961607	chr10:89632592-89632593	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
2	rs34357461	chr10:89632640-89632641	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
3	rs34131165	chr10:89632648-89632649	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
4	rs377060401	chr10:89632657-89632658	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
5	rs143108834	chr10:89632662-89632663	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
6	rs34490612	chr10:89632669-89632670	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
7	rs142400921	chr10:89632742-89632743	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
8	rs555630411	chr10:89632770-89632771	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
9	rs535828595	chr10:89632797-89632798	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
10	rs573892052	chr10:89632831-89632832	Enhancers Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
11	rs35451923	chr10:89632835-89632836	Enhancers Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	5 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs139179761	chr10:89632855-89632856	Enhancers Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
13	rs185928652	chr10:89632894-89632895	Enhancers Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
14	rs530279613	chr10:89632901-89632902	Enhancers Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
15	rs545110007	chr10:89632913-89632914	Enhancers Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
16	rs142980260	chr10:89632919-89632920	Enhancers Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
17	rs371523095	chr10:89633036-89633037	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
18	rs528684912	chr10:89633075-89633076	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
19	rs546920626	chr10:89633117-89633118	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
20	rs539661455	chr10:89633169-89633170	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
21	rs79670917	chr10:89633230-89633231	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
22	rs34370136	chr10:89633231-89633232	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	5 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs550921803	chr10:89633253-89633254	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
24	rs150837231	chr10:89633258-89633259	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
25	rs35922336	chr10:89633289-89633290	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	5 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs551438646	chr10:89633299-89633300	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
27	rs34453563	chr10:89633307-89633308	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	5 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs140600853	chr10:89633312-89633313	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
29	rs533978819	chr10:89633317-89633318	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
30	rs555276702	chr10:89633370-89633371	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
31	rs149643175	chr10:89633372-89633373	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
32	rs537767124	chr10:89633418-89633419	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
33	rs370800959	chr10:89633422-89633423	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
34	rs556532567	chr10:89633437-89633438	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
35	rs577693238	chr10:89633439-89633440	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
36	rs535809182	chr10:89633446-89633447	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
37	rs35286956	chr10:89633447-89633448	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
38	rs545073772	chr10:89633482-89633483	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
39	rs555791472	chr10:89633485-89633486	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
40	rs373066609	chr10:89633512-89633513	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
41	rs548355517	chr10:89633526-89633527	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
42	rs560444260	chr10:89633564-89633565	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
43	rs572056873	chr10:89633615-89633616	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
44	rs144314103	chr10:89633622-89633623	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
45	rs190698454	chr10:89633641-89633642	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
46	rs181175186	chr10:89633732-89633733	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
47	rs34784775	chr10:89633749-89633750	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
48	rs562871063	chr10:89633797-89633798	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
49	rs533151446	chr10:89633862-89633863	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
50	rs140137314	chr10:89633879-89633880	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:119)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21364760	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Wilms tumour	21544195	CNVD
Glioblastoma multiforme	21569311	CNVD
Cancer	20164919	CNVD
Melanoma	17363583	CNVD
small cell lung cancer	20016488	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Cancer	20164920	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Colorectal cancer	19359472	CNVD
Neurocytoma	17123091	CNVD
Prostate cancer	16461572	CNVD
Basal-like breast cancer	18066063	CNVD
Effusion lymphoma	18079361	CNVD
Glioblastoma multiforme	19115005	CNVD
Prostate cancer	21147910	CNVD
Lung cancer	21911935	CNVD
Myelofibrosis	22110671	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	22048815	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Glioblastoma multiforme	19435819	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Melanoma	20877625	CNVD
Non-syndromic sensorineural hearing loss	20020426	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	22065749	CNVD
Cancer	22000013	CNVD
Colon cancer	22065749	CNVD
Endometrial cancer	22065749	CNVD
Lung cancer	20668451	CNVD
Breast cancer	17634833	CNVD
Cancer	20215515	CNVD
Glioblastoma multiforme	21727940	CNVD
Prostate cancer	19363497	CNVD
Prostate cancer	17700571	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Cutaneous malignant melanoma	18794153	CNVD
Ovarian cancer	21781307	CNVD
T-cell lymphomas	22341440	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Autism	20964600	CNVD
Endometrial cancer	19261849	CNVD
Central neurocytomas	17123091	CNVD
Malignant melanoma	17260012	CNVD
Congenital anomalies of the kidney and urinary tract	18852474	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:503 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89624400-89646400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:89625600-89663000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:89627200-89645800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr10:89627400-89638200	Weak transcription	Placenta	Placenta
5	chr10:89627600-89645600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:89628000-89635200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr10:89628200-89635800	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr10:89628200-89646200	Weak transcription	Fetal Muscle Leg	muscle
9	chr10:89628200-89646600	Weak transcription	Colonic Mucosa	Colon
10	chr10:89628400-89633800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr10:89628400-89637800	Weak transcription	Fetal Intestine Small	intestine
12	chr10:89628400-89662000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr10:89628600-89632800	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr10:89628600-89632800	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr10:89628600-89633600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr10:89628600-89635000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr10:89628600-89636400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr10:89628600-89638200	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr10:89628600-89645800	Weak transcription	HSMMtube	muscle
20	chr10:89628800-89633200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr10:89628800-89638400	Weak transcription	K562	blood
22	chr10:89628800-89645600	Weak transcription	Fetal Kidney	kidney
23	chr10:89628800-89647000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr10:89629000-89633200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr10:89629000-89633200	Weak transcription	HUVEC	blood vessel
26	chr10:89629000-89637600	Weak transcription	HMEC	breast
27	chr10:89629200-89632800	Weak transcription	Esophagus	oesophagus
28	chr10:89629400-89632600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr10:89629400-89632600	Weak transcription	Lung	lung
30	chr10:89629400-89632600	Weak transcription	Pancreas	Pancrea
31	chr10:89629400-89632800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr10:89629400-89633000	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr10:89629400-89637600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr10:89629400-89646200	Weak transcription	Fetal Muscle Trunk	muscle
35	chr10:89629800-89632600	Strong transcription	Fetal Thymus	thymus
36	chr10:89629800-89637400	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr10:89629800-89637600	Weak transcription	NHEK	skin
38	chr10:89629800-89644600	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr10:89630000-89632600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr10:89630000-89632800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr10:89630000-89638200	Weak transcription	Stomach Mucosa	stomach
42	chr10:89630000-89645600	Weak transcription	NH-A	brain
43	chr10:89630200-89633000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr10:89630200-89633000	Weak transcription	Osteobl	bone
45	chr10:89630200-89634000	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr10:89630200-89637600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr10:89630400-89632800	Genic enhancers	Primary monocytes fromperipheralblood	blood
48	chr10:89630400-89636600	Enhancers	Primary B cells from cord blood	blood
49	chr10:89630600-89632800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr10:89630800-89632800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links