Variant report

Variant	rs555630411
Chromosome Location	chr10:89632770-89632771
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:89576887..89579810-chr10:89632591..89635220,2	K562	blood:
2	chr10:89632106..89634679-chr10:89635218..89637761,3	MCF-7	breast:
3	chr10:89631936..89633868-chr10:90147243..90149574,2	MCF-7	breast:
4	chr10:89622936..89626124-chr10:89632043..89636497,5	MCF-7	breast:
5	chr10:89629893..89635065-chr10:89636010..89640351,6	K562	blood:
6	chr10:89627048..89629019-chr10:89631649..89634484,2	K562	blood:
7	chr10:89630597..89633078-chr10:89635123..89637172,2	MCF-7	breast:
8	chr10:89627960..89634049-chr10:89634179..89640530,8	K562	blood:
9	chr10:89619679..89625045-chr10:89627844..89633340,9	K562	blood:

No data

Variant related genes	Relation type
ENSG00000223820	Chromatin interaction
ENSG00000171862	Chromatin interaction
ENSG00000224745	Chromatin interaction
ENSG00000138138	Chromatin interaction
ENSG00000227268	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044700	chr10:89615125-89641293	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	esv1793643	chr10:89625582-89645473	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv1793518	chr10:89625582-89733420	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	esv1798260	chr10:89625582-89733420	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv1035278	chr10:89629273-89641293	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv551832	chr10:89630424-89650759	Strong transcription Transcr. at gene 5' and 3' Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1050406	chr10:89632138-89657906	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	esv275087	chr10:89632510-89642848	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89624400-89646400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:89625600-89663000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:89627200-89645800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr10:89627400-89638200	Weak transcription	Placenta	Placenta
5	chr10:89627600-89645600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:89628000-89635200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr10:89628200-89635800	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr10:89628200-89646200	Weak transcription	Fetal Muscle Leg	muscle
9	chr10:89628200-89646600	Weak transcription	Colonic Mucosa	Colon
10	chr10:89628400-89633800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr10:89628400-89637800	Weak transcription	Fetal Intestine Small	intestine
12	chr10:89628400-89662000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr10:89628600-89632800	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr10:89628600-89632800	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr10:89628600-89633600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr10:89628600-89635000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr10:89628600-89636400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr10:89628600-89638200	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr10:89628600-89645800	Weak transcription	HSMMtube	muscle
20	chr10:89628800-89633200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr10:89628800-89638400	Weak transcription	K562	blood
22	chr10:89628800-89645600	Weak transcription	Fetal Kidney	kidney
23	chr10:89628800-89647000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr10:89629000-89633200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr10:89629000-89633200	Weak transcription	HUVEC	blood vessel
26	chr10:89629000-89637600	Weak transcription	HMEC	breast
27	chr10:89629200-89632800	Weak transcription	Esophagus	oesophagus
28	chr10:89629400-89632800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr10:89629400-89633000	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr10:89629400-89637600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr10:89629400-89646200	Weak transcription	Fetal Muscle Trunk	muscle
32	chr10:89629800-89637400	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr10:89629800-89637600	Weak transcription	NHEK	skin
34	chr10:89629800-89644600	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr10:89630000-89632800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr10:89630000-89638200	Weak transcription	Stomach Mucosa	stomach
37	chr10:89630000-89645600	Weak transcription	NH-A	brain
38	chr10:89630200-89633000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr10:89630200-89633000	Weak transcription	Osteobl	bone
40	chr10:89630200-89634000	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr10:89630200-89637600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr10:89630400-89632800	Genic enhancers	Primary monocytes fromperipheralblood	blood
43	chr10:89630400-89636600	Enhancers	Primary B cells from cord blood	blood
44	chr10:89630600-89632800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr10:89630800-89632800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr10:89630800-89633800	Weak transcription	Rectal Smooth Muscle	rectum
47	chr10:89631000-89633400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr10:89631000-89633800	Weak transcription	Brain Hippocampus Middle	brain
49	chr10:89631000-89638400	Weak transcription	Fetal Heart	heart
50	chr10:89631000-89645600	Weak transcription	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links