Variant report

Variant	esv2757074
Chromosome Location	chr4:102772861-102933949
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1190)
CpG islands
(count:122)
Chromatin interactive
region (count:48)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1190 , 50 per page) page: 1 2 3 4 5 6 7 ... 24

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr4:102806719-102807095	HepG2	liver:	n/a	n/a
2	ARID3A	chr4:102786938-102787378	HepG2	liver:	n/a	n/a
3	ATF2	chr4:102875018-102875480	H1-hESC	embryonic stem cell:	n/a	n/a
4	ATF2	chr4:102874997-102875510	H1-hESC	embryonic stem cell:	n/a	n/a
5	ATF2	chr4:102928871-102929419	GM12878	blood:	n/a	n/a
6	ATF3	chr4:102786662-102787351	A549	lung:	n/a	n/a
7	ATF3	chr4:102786541-102787367	A549	lung:	n/a	n/a
8	ATF3	chr4:102891559-102892187	A549	lung:	n/a	n/a
9	BATF	chr4:102929090-102929345	GM12878	blood:	n/a	chr4:102929197-102929205
10	BATF	chr4:102929053-102929342	GM12878	blood:	n/a	chr4:102929197-102929205
11	BCL3	chr4:102891602-102892411	A549	lung:	n/a	chr4:102891937-102891944
12	BCL3	chr4:102898097-102898669	A549	lung:	n/a	n/a
13	BCL3	chr4:102891662-102892194	A549	lung:	n/a	chr4:102891937-102891944
14	BCL3	chr4:102786658-102787286	A549	lung:	n/a	n/a
15	BCL3	chr4:102889110-102889709	A549	lung:	n/a	n/a
16	BCL3	chr4:102786534-102787468	A549	lung:	n/a	n/a
17	BCL3	chr4:102898061-102898877	A549	lung:	n/a	n/a
18	BHLHE40	chr4:102806799-102807077	HepG2	liver:	n/a	n/a
19	BRCA1	chr4:102875169-102875556	Hela-S3	cervix:	n/a	n/a
20	BRCA1	chr4:102897789-102898772	Hela-S3	cervix:	n/a	n/a
21	BRCA1	chr4:102864499-102864545	GM12878	blood:	n/a	n/a
22	BRCA1	chr4:102889042-102889556	Hela-S3	cervix:	n/a	n/a
23	CBX3	chr4:102898123-102898750	HCT-116	colon:	n/a	n/a
24	CBX3	chr4:102902726-102903369	HCT-116	colon:	n/a	n/a
25	CEBPB	chr4:102859976-102860454	ECC-1	luminal epithelium:	n/a	chr4:102860203-102860214 chr4:102860253-102860266
26	CEBPB	chr4:102808053-102808294	HepG2	liver:	n/a	chr4:102808169-102808180
27	CEBPB	chr4:102786791-102787301	MCF-7	breast:	n/a	n/a
28	CEBPB	chr4:102778281-102778728	MCF-7	breast:	n/a	chr4:102778525-102778534 chr4:102778525-102778534 chr4:102778525-102778534
29	CEBPB	chr4:102806761-102807122	HepG2	liver:	n/a	chr4:102806919-102806930
30	CEBPB	chr4:102876021-102876528	ECC-1	luminal epithelium:	n/a	n/a
31	CEBPB	chr4:102898283-102898601	ECC-1	luminal epithelium:	n/a	n/a
32	CEBPB	chr4:102806702-102807108	A549	lung:	n/a	chr4:102806919-102806930
33	CEBPB	chr4:102859965-102860440	Hela-S3	cervix:	n/a	chr4:102860203-102860214 chr4:102860253-102860266
34	CEBPB	chr4:102778353-102778616	MCF-7	breast:	n/a	chr4:102778525-102778534 chr4:102778525-102778534 chr4:102778525-102778534
35	CEBPB	chr4:102778413-102778729	ECC-1	luminal epithelium:	n/a	chr4:102778525-102778534 chr4:102778525-102778534 chr4:102778525-102778534
36	CEBPB	chr4:102778350-102778695	HepG2	liver:	n/a	chr4:102778525-102778534 chr4:102778525-102778534 chr4:102778525-102778534
37	CEBPB	chr4:102778278-102778782	A549	lung:	n/a	chr4:102778525-102778534 chr4:102778525-102778534 chr4:102778525-102778534
38	CEBPB	chr4:102778353-102778697	IMR90	lung:	n/a	chr4:102778525-102778534 chr4:102778525-102778534 chr4:102778525-102778534
39	CEBPB	chr4:102842528-102842874	MCF-7	breast:	n/a	n/a
40	CEBPB	chr4:102821191-102821414	HepG2	liver:	n/a	chr4:102821287-102821298 chr4:102821286-102821299
41	CEBPB	chr4:102819100-102819300	HepG2	liver:	n/a	chr4:102819215-102819228 chr4:102819215-102819226
42	CEBPB	chr4:102806635-102807206	MCF-7	breast:	n/a	chr4:102806919-102806930
43	CEBPB	chr4:102898141-102898612	IMR90	lung:	n/a	n/a
44	CEBPB	chr4:102875003-102875504	A549	lung:	n/a	n/a
45	CEBPB	chr4:102891767-102892148	MCF-7	breast:	n/a	n/a
46	CEBPB	chr4:102786775-102787250	A549	lung:	n/a	n/a
47	CEBPB	chr4:102778306-102778735	ECC-1	luminal epithelium:	n/a	chr4:102778525-102778534 chr4:102778525-102778534 chr4:102778525-102778534
48	CEBPB	chr4:102778355-102778668	H1-hESC	embryonic stem cell:	n/a	chr4:102778525-102778534 chr4:102778525-102778534 chr4:102778525-102778534
49	CEBPB	chr4:102859908-102860460	ECC-1	luminal epithelium:	n/a	chr4:102860203-102860214 chr4:102860253-102860266
50	CEBPB	chr4:102862850-102863632	ECC-1	luminal epithelium:	n/a	n/a

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr4:102875309-102875359	GM12878	blood:	n/a
2	chr4:102878132-102878182	AG04450	lung:	fetal
3	chr4:102878132-102878182	Caco-2	colon:	n/a
4	chr4:102878132-102878182	HL-60	blood:	n/a
5	chr4:102878132-102878182	HepG2	liver:	n/a
6	chr4:102875309-102875359	NT2-D1	testis:	n/a
7	chr4:102875309-102875359	HEEpiC	esophagus:	n/a
8	chr4:102875309-102875359	Hela-S3	cervix:	n/a
9	chr4:102878132-102878182	NT2-D1	testis:	n/a
10	chr4:102875309-102875359	BE2_C	brain:	n/a
11	chr4:102878132-102878182	Hepatocyte	liver:	n/a
12	chr4:102875309-102875359	HRCEpiC	kidney:	n/a
13	chr4:102878132-102878182	SAEC	small airway:	n/a
14	chr4:102878132-102878182	HIPEpiC	eye:	n/a
15	chr4:102875309-102875359	HNPCEpiC	eye:	n/a
16	chr4:102878132-102878182	HAEpiC	amniotic membrane:	n/a
17	chr4:102878132-102878182	HCPEpiC	choroid plexus:	n/a
18	chr4:102878132-102878182	BJ	skin:	n/a
19	chr4:102878132-102878182	HRE	kidney:	n/a
20	chr4:102875309-102875359	ovcar-3	ovarian:	n/a
21	chr4:102878132-102878182	H1-hESC	embryonic stem cell:	embryo
22	chr4:102878132-102878182	AG09309	skin:	n/a
23	chr4:102878132-102878182	HCT-116	colon:	n/a
24	chr4:102878132-102878182	SKMC	muscle:	n/a
25	chr4:102875309-102875359	H1-hESC	embryonic stem cell:	embryo
26	chr4:102878132-102878182	HRPEpiC	eye:	n/a
27	chr4:102875309-102875359	GM12891	blood:	n/a
28	chr4:102875309-102875359	HCPEpiC	choroid plexus:	n/a
29	chr4:102875309-102875359	LNCaP	prostate:	n/a
30	chr4:102878132-102878182	NHDF-neo	bronchial:	n/a
31	chr4:102875309-102875359	CMK	blood:	n/a
32	chr4:102878132-102878182	ProgFib	skin:	n/a
33	chr4:102878132-102878182	ECC-1	luminal epithelium:	n/a
34	chr4:102875309-102875359	MCF10A-Er-Src	breast:	n/a
35	chr4:102875309-102875359	HIPEpiC	eye:	n/a
36	chr4:102875309-102875359	HRE	kidney:	n/a
37	chr4:102878132-102878182	BE2_C	brain:	n/a
38	chr4:102875309-102875359	Caco-2	colon:	n/a
39	chr4:102878132-102878182	IMR90	lung:	fetal
40	chr4:102875309-102875359	RPTEC	kidney:	n/a
41	chr4:102875309-102875359	HepG2	liver:	n/a
42	chr4:102878132-102878182	PANC-1	pancreas:	n/a
43	chr4:102875309-102875359	AG09309	skin:	n/a
44	chr4:102878132-102878182	NHBE	bronchial:	n/a
45	chr4:102875309-102875359	K562	blood:	n/a
46	chr4:102878132-102878182	K562	blood:	n/a
47	chr4:102875309-102875359	NHBE	bronchial:	n/a
48	chr4:102875309-102875359	HPAEpiC	pulmonary alveolar:	n/a
49	chr4:102875309-102875359	AG04449	skin:	fetal
50	chr4:102875309-102875359	HCM	heart:	n/a

(count:48 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:102926272..102927803-chr4:102933320..102936106,2	K562	blood:
2	chr4:102840186..102841875-chr4:102843846..102845982,2	K562	blood:
3	chr4:102266269..102272575-chr4:102784697..102788612,6	MCF-7	breast:
4	chr4:102846487..102848228-chr4:102853686..102856013,2	MCF-7	breast:
5	chr4:102842702..102843248-chr4:102855080..102855669,2	MCF-7	breast:
6	chr4:102840186..102841875-chr4:102843846..102845982,2	K562	blood:
7	chr4:102267652..102269719-chr4:102783491..102785024,2	MCF-7	breast:
8	chr4:102842276..102843131-chr4:102874015..102874871,3	MCF-7	breast:
9	chr4:102777435..102779850-chr4:102786990..102788532,2	MCF-7	breast:
10	chr4:102874020..102874843-chr4:102891401..102892080,2	MCF-7	breast:
11	chr4:102905542..102907916-chr4:102924446..102926465,2	K562	blood:
12	chr4:102860897..102862820-chr4:102873982..102876353,2	MCF-7	breast:
13	chr4:102926272..102927803-chr4:102933320..102936106,2	K562	blood:
14	chr4:102831487..102833404-chr4:102833922..102836733,2	MCF-7	breast:
15	chr4:102792418..102794710-chr4:102794751..102797672,2	MCF-7	breast:
16	chr4:102777435..102779850-chr4:102786990..102788532,2	MCF-7	breast:
17	chr4:102860897..102862820-chr4:102873982..102876353,2	MCF-7	breast:
18	chr4:102831487..102833404-chr4:102833922..102836733,2	MCF-7	breast:
19	chr4:102778161..102781257-chr4:102784070..102788412,3	MCF-7	breast:
20	chr4:102913976..102916173-chr4:102919455..102922403,2	MCF-7	breast:
21	chr4:102889946..102892052-chr4:102899600..102901567,2	MCF-7	breast:
22	chr4:102889946..102892052-chr4:102899600..102901567,2	MCF-7	breast:
23	chr4:102853526..102855448-chr4:102860047..102862482,2	K562	blood:
24	chr4:102748202..102750922-chr4:102785267..102786848,2	MCF-7	breast:
25	chr4:102781326..102782926-chr4:102784724..102787064,2	MCF-7	breast:
26	chr4:102880000..102881759-chr4:102886736..102889314,2	MCF-7	breast:
27	chr4:102781326..102782926-chr4:102784724..102787064,2	MCF-7	breast:
28	chr4:102842214..102843068-chr4:102854874..102855625,2	MCF-7	breast:
29	chr3:64045097..64045973-chr4:102874042..102874640,2	MCF-7	breast:
30	chr4:102842702..102843248-chr4:102855080..102855669,2	MCF-7	breast:
31	chr4:102929581..102932403-chr4:102937190..102939421,2	K562	blood:
32	chr4:102791636..102793550-chr4:102797262..102799640,2	K562	blood:
33	chr4:102872789..102875813-chr4:102887302..102889181,3	MCF-7	breast:
34	chr4:102842276..102843131-chr4:102874015..102874871,3	MCF-7	breast:
35	chr4:102905542..102907916-chr4:102924446..102926465,2	K562	blood:
36	chr4:102880000..102881759-chr4:102886736..102889314,2	MCF-7	breast:
37	chr4:102874020..102874843-chr4:102891401..102892080,2	MCF-7	breast:
38	chr4:102842214..102843068-chr4:102854874..102855625,2	MCF-7	breast:
39	chr4:102819220..102821914-chr4:102824309..102827008,2	MCF-7	breast:
40	chr4:102872789..102875813-chr4:102887302..102889181,3	MCF-7	breast:
41	chr4:102791636..102793550-chr4:102797262..102799640,2	K562	blood:
42	chr4:102778161..102781257-chr4:102784070..102788412,3	MCF-7	breast:
43	chr4:102913976..102916173-chr4:102919455..102922403,2	MCF-7	breast:
44	chr4:102846487..102848228-chr4:102853686..102856013,2	MCF-7	breast:
45	chr4:102853526..102855448-chr4:102860047..102862482,2	K562	blood:
46	chr4:102819220..102821914-chr4:102824309..102827008,2	MCF-7	breast:
47	chr4:102792418..102794710-chr4:102794751..102797672,2	MCF-7	breast:
48	chr4:102842819..102843467-chr4:133460108..133460904,2	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLC39A8-2	chr4:102898051-102898257	ENSG00000251309.1
2	lnc-NFKB1-6	chr4:102893580-102893955	NONHSAT097574

No data

Variant related genes	Relation type
BANK1	TF binding region
MTND5P5	TF binding region
BANK1	CpG island
MTND5P5	CpG island
ENSG00000254531	chromatin interactions
ENSG00000138814	chromatin interactions

Extended variants
information (count: 5686 )
Associated
traits (count: 76 )

Variant overlapped rSNPs/rCNVs (count:5686 , 50 per page) page: 1 2 3 4 5 6 7 ... 114

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs4698971	chr4:102772861-102772862	Weak transcription Enhancers Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs114426780	chr4:102772870-102772871	Weak transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs138574221	chr4:102772906-102772907	Weak transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs190968133	chr4:102772920-102772921	Weak transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs534324448	chr4:102772968-102772969	Weak transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs556823244	chr4:102772970-102772971	Weak transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs538872511	chr4:102772973-102772974	Weak transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs182713496	chr4:102772977-102772978	Weak transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs185893067	chr4:102773085-102773086	Weak transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs142613887	chr4:102773132-102773133	Weak transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs564544555	chr4:102773172-102773173	Weak transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs191785989	chr4:102773267-102773268	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs553916502	chr4:102773293-102773294	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs576757871	chr4:102773308-102773309	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs111314358	chr4:102773318-102773319	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs536506290	chr4:102773342-102773343	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs562254014	chr4:102773367-102773368	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs529242954	chr4:102773408-102773409	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs183191943	chr4:102773418-102773419	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs559729014	chr4:102773427-102773428	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs533244223	chr4:102773445-102773446	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs138869976	chr4:102773457-102773458	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs559479148	chr4:102773465-102773466	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs188124809	chr4:102773519-102773520	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs149378289	chr4:102773611-102773612	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs190905146	chr4:102773624-102773625	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs541955636	chr4:102773627-102773628	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs376116664	chr4:102773659-102773660	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs567472987	chr4:102773660-102773661	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs57009245	chr4:102773661-102773662	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs56950886	chr4:102773662-102773663	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	mRNA abundance
32	rs113247651	chr4:102773663-102773664	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs113569379	chr4:102773664-102773665	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs77031530	chr4:102773668-102773669	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs182376145	chr4:102773696-102773697	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs577594699	chr4:102773700-102773701	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs368771130	chr4:102773734-102773735	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs538737882	chr4:102773759-102773760	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs4607219	chr4:102773838-102773839	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
40	rs576671991	chr4:102773841-102773842	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs187705130	chr4:102773847-102773848	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs144753781	chr4:102773878-102773879	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs574233669	chr4:102773884-102773885	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs532892431	chr4:102773886-102773887	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs541735281	chr4:102773937-102773938	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs115266946	chr4:102773979-102773980	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs536035090	chr4:102774017-102774018	Weak transcription Flanking Active TSS Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs558397747	chr4:102774064-102774065	Weak transcription Flanking Active TSS Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs533195005	chr4:102774089-102774090	Weak transcription Flanking Active TSS Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs41507945	chr4:102774138-102774139	Weak transcription Flanking Active TSS Genic enhancers Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:76)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Medulloblastoma	21979893	CNVD
Neuroblastoma	18923191	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Breast cancer	21858162	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	17603634	CNVD
Hepatocellular carcinoma	16750200	CNVD
Myxofibrosarcoma	16751306	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Breast cancer	16272173	CNVD
Colorectal cancer	19359472	CNVD
Malignant mesothelioma	18160781	CNVD
Medulloblastoma	18056178	CNVD
Multiple myeloma	17077331	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Oral squamous cell carcinoma	17134496	CNVD
4q-syndrome	17576883	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Muscular dystrophy	21149563	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Cervical cancer	21062161	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Lung cancer	19208797	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	21785460	CNVD
Myelodysplastic syndrome	21251322	CNVD
Lung cancer	18438408	CNVD
Cancer	22429812	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	21183584	CNVD
primary effusion lymphomas	17116491	CNVD
small cell lung cancer	20016488	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17133270	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Colorectal cancer	20459617	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Congenital anomalies of the kidney and urinary tract	20505237	CNVD
Breast cancer	17393978	CNVD
Ovarian cancer	21720365	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	16573809	CNVD
Multiple myeloma	16616336	CNVD
Melanoma	20688739	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	18000384	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
myeloid cancer	21057493	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:593 , 50 per page) page: 1 2 3 4 5 6 7 ... 12

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:102757400-102784600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:102772000-102773200	Genic enhancers	Primary B cells from peripheral blood	blood
3	chr4:102772000-102773200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:102772600-102773000	Enhancers	GM12878-XiMat	blood
5	chr4:102772600-102774000	Enhancers	Primary B cells from cord blood	blood
6	chr4:102773000-102774000	Weak transcription	GM12878-XiMat	blood
7	chr4:102773200-102774000	Weak transcription	Primary B cells from peripheral blood	blood
8	chr4:102773200-102774000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr4:102773200-102786200	Weak transcription	Primary hematopoietic stem cells	blood
10	chr4:102774000-102774400	Flanking Active TSS	Primary B cells from cord blood	blood
11	chr4:102774000-102774600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr4:102774000-102775400	Enhancers	GM12878-XiMat	blood
13	chr4:102774000-102776400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr4:102774000-102786800	Genic enhancers	Primary B cells from peripheral blood	blood
15	chr4:102774200-102774400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr4:102774200-102774600	Enhancers	A549	lung
17	chr4:102774200-102775400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr4:102774200-102775600	Enhancers	NH-A	brain
19	chr4:102774400-102775200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr4:102774400-102783400	Genic enhancers	Primary B cells from cord blood	blood
21	chr4:102774800-102775200	Enhancers	Psoas Muscle	Psoas
22	chr4:102775200-102775400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr4:102776400-102776800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr4:102776800-102783800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr4:102783400-102784400	Flanking Active TSS	Primary B cells from cord blood	blood
26	chr4:102783600-102784000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr4:102783600-102784400	Enhancers	HUVEC	blood vessel
28	chr4:102783800-102784200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr4:102784000-102784400	Enhancers	GM12878-XiMat	blood
30	chr4:102784000-102786400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr4:102784000-102793200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr4:102784200-102785600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr4:102784400-102785400	Genic enhancers	Primary B cells from cord blood	blood
34	chr4:102784600-102786200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr4:102785400-102790600	Strong transcription	Primary B cells from cord blood	blood
36	chr4:102785600-102786400	Enhancers	A549	lung
37	chr4:102785600-102786600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr4:102785600-102786800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr4:102785800-102786200	Enhancers	NHEK	skin
40	chr4:102785800-102786800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr4:102786000-102786600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr4:102786000-102786800	Enhancers	Placenta	Placenta
43	chr4:102786000-102787400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr4:102786200-102786800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr4:102786200-102786800	Enhancers	NH-A	brain
46	chr4:102786200-102787200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
47	chr4:102786200-102787400	Enhancers	HepG2	liver
48	chr4:102786200-102787800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr4:102786400-102786800	Flanking Active TSS	A549	lung
50	chr4:102786400-102787000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links