Variant report

Variant	rs41507945
Chromosome Location	chr4:102774138-102774139
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10516484	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12498977	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12500010	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12500743	0.87[EUR][1000 genomes]
rs12501163	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12512304	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13103373	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13106011	0.80[EUR][1000 genomes]
rs13107723	0.82[EUR][1000 genomes]
rs13109260	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13111489	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13120877	0.82[EUR][1000 genomes]
rs13121706	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13127559	0.80[EUR][1000 genomes]
rs13128847	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13135361	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13137047	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13140171	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13145804	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1345568	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1421624	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1469019	0.82[EUR][1000 genomes]
rs17031755	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17031758	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17031771	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17031789	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2544574	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2631241	0.87[CEU][hapmap]
rs2631243	0.87[CEU][hapmap];0.91[TSI][hapmap]
rs2631273	0.87[CEU][hapmap];0.88[MEX][hapmap];0.93[TSI][hapmap]
rs2850374	0.88[CEU][hapmap]
rs2851316	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34118030	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34125672	0.80[EUR][1000 genomes]
rs34397140	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35013900	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35190155	0.80[EUR][1000 genomes]
rs35205296	0.92[EUR][1000 genomes]
rs35400474	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35418410	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35507621	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35618358	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35916449	0.81[EUR][1000 genomes]
rs35926162	0.80[EUR][1000 genomes]
rs36005813	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4635818	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61465450	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62321672	0.84[EUR][1000 genomes]
rs62321728	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62321737	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62321738	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62322688	0.83[EUR][1000 genomes]
rs71597114	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869164	chr4:102483189-103213842	Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv999861	chr4:102576115-102930562	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2757945	chr4:102662699-103008940	Genic enhancers Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2759269	chr4:102662699-103008940	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1011180	chr4:102685236-102985945	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv537202	chr4:102685236-102985945	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv2757074	chr4:102772861-102933949	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	esv3389977	chr4:102773229-102774327	Genic enhancers Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:102757400-102784600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:102773200-102786200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr4:102774000-102774400	Flanking Active TSS	Primary B cells from cord blood	blood
4	chr4:102774000-102774600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr4:102774000-102775400	Enhancers	GM12878-XiMat	blood
6	chr4:102774000-102776400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr4:102774000-102786800	Genic enhancers	Primary B cells from peripheral blood	blood

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