Variant report

Variant	rs35916449
Chromosome Location	chr4:102736617-102736618
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10516484	0.82[EUR][1000 genomes]
rs12500010	0.81[EUR][1000 genomes]
rs12500743	0.86[EUR][1000 genomes]
rs12501163	0.81[EUR][1000 genomes]
rs12505627	0.96[EUR][1000 genomes]
rs12512304	0.84[EUR][1000 genomes]
rs13103373	0.81[EUR][1000 genomes]
rs13108165	0.96[EUR][1000 genomes]
rs13121706	0.81[EUR][1000 genomes]
rs13127559	0.93[EUR][1000 genomes]
rs13128847	0.81[EUR][1000 genomes]
rs13140171	0.81[EUR][1000 genomes]
rs13145804	0.81[EUR][1000 genomes]
rs1345568	0.81[EUR][1000 genomes]
rs1421624	0.81[EUR][1000 genomes]
rs1469019	0.91[EUR][1000 genomes]
rs17031755	0.81[EUR][1000 genomes]
rs17031758	0.81[EUR][1000 genomes]
rs28496978	0.81[EUR][1000 genomes]
rs34118030	0.81[EUR][1000 genomes]
rs34125672	0.93[EUR][1000 genomes]
rs34397140	0.81[EUR][1000 genomes]
rs35072064	0.96[EUR][1000 genomes]
rs35190155	0.89[EUR][1000 genomes]
rs35205296	0.81[EUR][1000 genomes]
rs35400474	0.81[EUR][1000 genomes]
rs35618358	0.81[EUR][1000 genomes]
rs35926162	0.89[EUR][1000 genomes]
rs41507945	0.81[EUR][1000 genomes]
rs61465450	0.81[EUR][1000 genomes]
rs62321670	0.96[EUR][1000 genomes]
rs62321672	0.96[EUR][1000 genomes]
rs62321728	0.81[EUR][1000 genomes]
rs7693190	0.86[EUR][1000 genomes]
rs9996100	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997690	chr4:102397296-102758125	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv537201	chr4:102397296-102758125	Genic enhancers Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv869164	chr4:102483189-103213842	Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv999861	chr4:102576115-102930562	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv879681	chr4:102641265-102769677	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv2757945	chr4:102662699-103008940	Genic enhancers Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	esv2759269	chr4:102662699-103008940	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1011180	chr4:102685236-102985945	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv537202	chr4:102685236-102985945	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:102734800-102737200	Active TSS	Primary B cells from peripheral blood	blood
2	chr4:102735600-102738200	Flanking Active TSS	Primary B cells from cord blood	blood
3	chr4:102735600-102739400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr4:102735800-102740000	Weak transcription	Primary hematopoietic stem cells	blood

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