Variant report

Variant	esv2758192
Chromosome Location	chr9:86414024-86603602
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4970)
CpG islands
(count:2260)
Chromatin interactive
region (count:154)
LncRNA
region (count:55)
Mature miRNA
region (count: 2)
miRNA target
sites (count:2)

(count:4970 , 50 per page) page: 1 2 3 4 5 6 7 ... 100

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr9:86581470-86581472	HepG2	liver:	n/a	n/a
2	ARID3A	chr9:86594976-86595467	K562	blood:	n/a	n/a
3	ARID3A	chr9:86578453-86578585	HepG2	liver:	n/a	n/a
4	ARID3A	chr9:86594551-86595923	HepG2	liver:	n/a	n/a
5	ARID3A	chr9:86601207-86602382	K562	blood:	n/a	n/a
6	ARID3A	chr9:86500378-86500758	HepG2	liver:	n/a	n/a
7	ARID3A	chr9:86597040-86597385	K562	blood:	n/a	n/a
8	ARID3A	chr9:86535494-86536921	HepG2	liver:	n/a	n/a
9	ARID3A	chr9:86579582-86579944	K562	blood:	n/a	n/a
10	ARID3A	chr9:86574100-86574109	HepG2	liver:	n/a	n/a
11	ARID3A	chr9:86601213-86602730	HepG2	liver:	n/a	n/a
12	ARID3A	chr9:86597156-86597200	HepG2	liver:	n/a	n/a
13	ARID3A	chr9:86571380-86571827	HepG2	liver:	n/a	n/a
14	ARID3A	chr9:86596449-86596840	K562	blood:	n/a	n/a
15	ATF1	chr9:86594482-86595795	K562	blood:	n/a	n/a
16	ATF1	chr9:86597081-86597370	K562	blood:	n/a	n/a
17	ATF1	chr9:86579533-86579865	K562	blood:	n/a	n/a
18	ATF2	chr9:86581755-86582464	H1-hESC	embryonic stem cell:	n/a	n/a
19	ATF2	chr9:86580548-86581216	GM12878	blood:	n/a	n/a
20	ATF2	chr9:86595246-86595897	GM12878	blood:	n/a	n/a
21	ATF2	chr9:86580202-86581672	GM12878	blood:	n/a	n/a
22	ATF2	chr9:86535487-86536085	H1-hESC	embryonic stem cell:	n/a	n/a
23	ATF2	chr9:86535405-86536155	GM12878	blood:	n/a	n/a
24	ATF2	chr9:86535464-86536111	H1-hESC	embryonic stem cell:	n/a	n/a
25	ATF2	chr9:86579550-86580178	GM12878	blood:	n/a	n/a
26	ATF2	chr9:86535356-86536066	GM12878	blood:	n/a	n/a
27	ATF2	chr9:86594569-86595833	H1-hESC	embryonic stem cell:	n/a	n/a
28	ATF2	chr9:86580506-86581613	H1-hESC	embryonic stem cell:	n/a	n/a
29	ATF2	chr9:86594042-86596447	GM12878	blood:	n/a	n/a
30	ATF2	chr9:86594095-86595833	H1-hESC	embryonic stem cell:	n/a	n/a
31	ATF2	chr9:86594320-86594737	GM12878	blood:	n/a	n/a
32	ATF2	chr9:86579548-86580083	GM12878	blood:	n/a	n/a
33	ATF3	chr9:86500485-86500713	K562	blood:	n/a	n/a
34	ATF3	chr9:86594732-86595905	A549	lung:	n/a	chr9:86595872-86595881 chr9:86595620-86595629
35	ATF3	chr9:86595014-86595833	A549	lung:	n/a	chr9:86595620-86595629
36	ATF3	chr9:86577106-86577655	HCT-116	colon:	n/a	n/a
37	ATF3	chr9:86500470-86500690	HepG2	liver:	n/a	n/a
38	BACH1	chr9:86596642-86596737	H1-hESC	embryonic stem cell:	n/a	n/a
39	BACH1	chr9:86596582-86597119	K562	blood:	n/a	n/a
40	BACH1	chr9:86535776-86536716	H1-hESC	embryonic stem cell:	n/a	n/a
41	BACH1	chr9:86595351-86595999	H1-hESC	embryonic stem cell:	n/a	n/a
42	BATF	chr9:86464911-86465156	GM12878	blood:	n/a	n/a
43	BATF	chr9:86547853-86548109	GM12878	blood:	n/a	n/a
44	BATF	chr9:86547907-86548108	GM12878	blood:	n/a	n/a
45	BATF	chr9:86535650-86536027	GM12878	blood:	n/a	n/a
46	BATF	chr9:86595412-86595753	GM12878	blood:	n/a	n/a
47	BCL11A	chr9:86464843-86465149	GM12878	blood:	n/a	n/a
48	BCL11A	chr9:86535614-86536076	GM12878	blood:	n/a	n/a
49	BCL11A	chr9:86535684-86536658	GM12878	blood:	n/a	chr9:86536409-86536422 chr9:86536253-86536266
50	BCL3	chr9:86540372-86540633	GM12878	blood:	n/a	n/a

(count:2260 , 50 per page) page: 1 2 3 4 5 6 7 ... 46

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:86571904-86571954	RPTEC	kidney:	n/a
2	chr9:86433081-86433131	RPTEC	kidney:	n/a
3	chr9:86536513-86536563	IMR90	lung:	fetal
4	chr9:86571904-86571954	RPTEC	kidney:	n/a
5	chr9:86433081-86433131	RPTEC	kidney:	n/a
6	chr9:86536513-86536563	IMR90	lung:	fetal
7	chr9:86536028-86536078	T-47D	breast:	n/a
8	chr9:86571585-86571635	HEK293	kidney:	embryo
9	chr9:86573761-86573811	NB4	blood:	n/a
10	chr9:86594226-86594276	HNPCEpiC	eye:	n/a
11	chr9:86571814-86571864	AG04450	lung:	fetal
12	chr9:86594091-86594141	T-47D	breast:	n/a
13	chr9:86594214-86594264	CMK	blood:	n/a
14	chr9:86595816-86595866	HNPCEpiC	eye:	n/a
15	chr9:86597173-86597223	AG10803	skin:	n/a
16	chr9:86569098-86569148	SAEC	small airway:	n/a
17	chr9:86594091-86594141	BE2_C	brain:	n/a
18	chr9:86594803-86594853	GM12891	blood:	n/a
19	chr9:86571409-86571459	PANC-1	pancreas:	n/a
20	chr9:86535572-86535622	GM12892	blood:	n/a
21	chr9:86594803-86594853	AG09319	gingival:	n/a
22	chr9:86536043-86536093	HCM	heart:	n/a
23	chr9:86433081-86433131	CMK	blood:	n/a
24	chr9:86571409-86571459	AG04450	lung:	fetal
25	chr9:86432031-86432081	HRE	kidney:	n/a
26	chr9:86594214-86594264	HIPEpiC	eye:	n/a
27	chr9:86536028-86536078	GM06990	blood:	n/a
28	chr9:86594803-86594853	HEEpiC	esophagus:	n/a
29	chr9:86536513-86536563	HCPEpiC	choroid plexus:	n/a
30	chr9:86536513-86536563	GM06990	blood:	n/a
31	chr9:86594214-86594264	SAEC	small airway:	n/a
32	chr9:86571814-86571864	HepG2	liver:	n/a
33	chr9:86572014-86572064	ovcar-3	ovarian:	n/a
34	chr9:86595151-86595201	AG09319	gingival:	n/a
35	chr9:86571432-86571482	HRE	kidney:	n/a
36	chr9:86594091-86594141	PFSK-1	brain:	n/a
37	chr9:86571904-86571954	AG04449	skin:	fetal
38	chr9:86571432-86571482	GM06990	blood:	n/a
39	chr9:86535572-86535622	SK-N-SH_RA	brain:	n/a
40	chr9:86594803-86594853	U87	brain:	n/a
41	chr9:86594091-86594141	SAEC	small airway:	n/a
42	chr9:86536513-86536563	LNCaP	prostate:	n/a
43	chr9:86536028-86536078	SKMC	muscle:	n/a
44	chr9:86594416-86594466	Hepatocyte	liver:	n/a
45	chr9:86595452-86595502	HL-60	blood:	n/a
46	chr9:86571432-86571482	GM12892	blood:	n/a
47	chr9:86595816-86595866	NB4	blood:	n/a
48	chr9:86432854-86432904	HepG2	liver:	n/a
49	chr9:86595816-86595866	LNCaP	prostate:	n/a
50	chr9:86595151-86595201	ECC-1	luminal epithelium:	n/a

(count:154 , 50 per page) page: 1 2 3 4

No.	Distal block	Cell Line	Cell type
1	chr12:7052976..7053657-chr9:86594802..86595608,2	Hela-S3	cervix:
2	chr15:66796716..66797533-chr9:86595214..86595851,2	Hela-S3	cervix:
3	chr9:86552479..86553254-chr9:86875743..86876720,3	K562	blood:
4	chr9:86321564..86323208-chr9:86572109..86574436,2	MCF-7	breast:
5	chr9:86534520..86537940-chr9:86592614..86595774,6	K562	blood:
6	chr20:56964201..56965088-chr9:86595330..86595831,2	Hela-S3	cervix:
7	chr9:86499637..86502408-chr9:86534472..86537007,2	MCF-7	breast:
8	chr9:86551919..86553846-chr9:86578831..86580851,2	K562	blood:
9	chr9:86249075..86251124-chr9:86419195..86422058,2	K562	blood:
10	chr9:86548981..86555040-chr9:86588754..86596573,13	MCF-7	breast:
11	chr9:86552635..86553455-chr9:86929530..86930770,4	MCF-7	breast:
12	chr7:104652758..104653646-chr9:86595375..86596036,2	HCT-116	colon:
13	chr9:86543303..86546156-chr9:86594809..86597216,2	K562	blood:
14	chr9:86534520..86537940-chr9:86592614..86595774,6	K562	blood:
15	chr9:86562110..86564008-chr9:86566569..86568796,2	K562	blood:
16	chr15:44828332..44829115-chr9:86594438..86595354,2	Hela-S3	cervix:
17	chr9:86402003..86404732-chr9:86411861..86414651,2	MCF-7	breast:
18	chr11:62609023..62610551-chr9:86593862..86596703,2	MCF-7	breast:
19	chr9:86534003..86537844-chr9:86570557..86574103,8	K562	blood:
20	chr3:51705086..51705705-chr9:86536186..86536829,2	HCT-116	colon:
21	chr9:86544458..86547106-chr9:86589351..86591605,3	K562	blood:
22	chr9:86237033..86239481-chr9:86571525..86573399,2	MCF-7	breast:
23	chr9:86551370..86553240-chr9:86557554..86559080,2	MCF-7	breast:
24	chr1:45186975..45187766-chr9:86595552..86596531,2	Hela-S3	cervix:
25	chr1:167904971..167905698-chr9:86571060..86571726,2	Hela-S3	cervix:
26	chr3:14988158..14990908-chr9:86594139..86596513,2	MCF-7	breast:
27	chr3:73159959..73160592-chr9:86571618..86572404,2	Hela-S3	cervix:
28	chr9:86561645..86563612-chr9:86594555..86596170,2	MCF-7	breast:
29	chr9:86531254..86532896-chr9:86534357..86536311,2	MCF-7	breast:
30	chr16:776639..778399-chr9:86594223..86596178,2	MCF-7	breast:
31	chr3:170587539..170588434-chr9:86594849..86595680,2	Hela-S3	cervix:
32	chr9:86545280..86547707-chr9:86930734..86934388,3	MCF-7	breast:
33	chr9:86237271..86239294-chr9:86534482..86537409,3	MCF-7	breast:
34	chr7:98922926..98923573-chr9:86571634..86572370,2	Hela-S3	cervix:
35	chr9:86411947..86414043-chr9:86595098..86597695,2	MCF-7	breast:
36	chr10:38145904..38148087-chr9:86593901..86595485,2	MCF-7	breast:
37	chr9:86320718..86323719-chr9:86450162..86455199,6	MCF-7	breast:
38	chr9:86557117..86561082-chr9:86568823..86572944,4	MCF-7	breast:
39	chr9:86534503..86538702-chr9:86568820..86574555,7	MCF-7	breast:
40	chr9:86566551..86568592-chr9:86569030..86570936,2	K562	blood:
41	chr9:86551814..86552501-chr9:86930023..86930750,2	MCF-7	breast:
42	chr9:86592736..86597542-chr9:86606160..86610925,6	K562	blood:
43	chr7:138794412..138795161-chr9:86594899..86595728,2	NB4	blood:
44	chr9:86535234..86536021-chr9:86875727..86876675,2	MCF-7	breast:
45	chr9:86535076..86537991-chr9:86590146..86593000,2	K562	blood:
46	chr9:86321176..86323111-chr9:86534764..86537575,5	MCF-7	breast:
47	chr9:86551370..86553240-chr9:86557554..86559080,2	MCF-7	breast:
48	chr7:35840834..35841579-chr9:86595754..86596267,2	Hela-S3	cervix:
49	chr9:86535411..86537432-chr9:127629716..127632471,2	MCF-7	breast:
50	chr9:86599996..86602953-chr9:86874625..86876335,2	MCF-7	breast:

(count:55 , 50 per page) page: 1 2

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RMI1-6	chr9:86433316-86433488	NONHSAT132748
2	lnc-RMI1-5	chr9:86473779-86474069	ENSG00000231616.4
3	lnc-RMI1-5	chr9:86450466-86450620	ENSG00000226877.1
4	lnc-RMI1-5	chr9:86444571-86444630	ENSG00000226877.1
5	lnc-RMI1-5	chr9:86462573-86462823	ENSG00000231616.4
6	lnc-RMI1-5	chr9:86469971-86470092	ENSG00000231616.4
7	lnc-RMI1-5	chr9:86451945-86452058	ENSG00000226877.1
8	lnc-RMI1-6	chr9:86432881-86432983	NONHSAT132748
9	lnc-RMI1-1	chr9:86590348-86590692	ENSG00000235298.1
10	lnc-RMI1-5	chr9:86451945-86452058	ENSG00000226877.1
11	lnc-RMI1-5	chr9:86464287-86464506	ENSG00000231616.4
12	lnc-RMI1-6	chr9:86434721-86434785	NONHSAT132748
13	lnc-RMI1-1	chr9:86587148-86587192	ENSG00000235298.1
14	lnc-RMI1-5	chr9:86473216-86474075	ENSG00000231616.4
15	lnc-RMI1-5	chr9:86474193-86474240	ENSG00000231616.4
16	lnc-RMI1-6	chr9:86432881-86432983	ENSG00000245608
17	lnc-RMI1-5	chr9:86446478-86446527	ENSG00000226877.3
18	lnc-RMI1-5	chr9:86446475-86446527	ENSG00000226877.1
19	lnc-RMI1-5	chr9:86464323-86464506	ENSG00000231616.4
20	lnc-RMI1-5	chr9:86474193-86474240	ENSG00000231616.4
21	lnc-RMI1-5	chr9:86463725-86463870	ENSG00000231616.4
22	lnc-RMI1-5	chr9:86473756-86474075	ENSG00000231616.4
23	lnc-RMI1-5	chr9:86452587-86452776	ENSG00000226877.3
24	lnc-RMI1-5	chr9:86473779-86474070	ENSG00000231616.4
25	lnc-RMI1-5	chr9:86452323-86452502	ENSG00000226877.1
26	lnc-RMI1-5	chr9:86463801-86463870	ENSG00000231616.4
27	lnc-RMI1-5	chr9:86464287-86464506	ENSG00000231616.4
28	lnc-RMI1-5	chr9:86446478-86446527	ENSG00000226877.1
29	lnc-RMI1-6	chr9:86435226-86435354	NONHSAT132748
30	lnc-RMI1-5	chr9:86452587-86452779	ENSG00000226877.1
31	lnc-KIF27-1	chr9:86431911-86432042	NONHSAT132747
32	lnc-RMI1-6	chr9:86435226-86435354	ENSG00000245608
33	lnc-RMI1-5	chr9:86473779-86474075	ENSG00000231616.4
34	lnc-RMI1-6	chr9:86434721-86434785	ENSG00000245608
35	lnc-RMI1-5	chr9:86482629-86483154	ENSG00000231616.4
36	lnc-RMI1-5	chr9:86474193-86474240	ENSG00000231616.4
37	lnc-RMI1-6	chr9:86442823-86443094	NONHSAT132748
38	lnc-RMI1-5	chr9:86451945-86452058	ENSG00000226877.3
39	lnc-RMI1-5	chr9:86482629-86483335	ENSG00000231616.4
40	lnc-RMI1-5	chr9:86474492-86475013	ENSG00000231616.4
41	lnc-RMI1-5	chr9:86474193-86474250	ENSG00000231616.4
42	lnc-RMI1-5	chr9:86445783-86445854	ENSG00000226877.1
43	lnc-RMI1-5	chr9:86463753-86463870	ENSG00000231616.4
44	lnc-RMI1-5	chr9:86473893-86474075	ENSG00000231616.4
45	lnc-RMI1-5	chr9:86451945-86452058	ENSG00000226877.1
46	lnc-RMI1-5	chr9:86446480-86446527	ENSG00000226877.1
47	lnc-RMI1-5	chr9:86452323-86452500	ENSG00000226877.1
48	lnc-RMI1-5	chr9:86473893-86474075	ENSG00000231616.4
49	lnc-RMI1-6	chr9:86434446-86434617	NONHSAT132748
50	lnc-RMI1-5	chr9:86474193-86474250	ENSG00000231616.4

miRNA name	Chromosome Location	mirBase accession
hsa-miR-7-5p	chr9:86584727-86584749	MIMAT0000252_2
hsa-miR-7-1-3p	chr9:86584686-86584707	MIMAT0004553

(count:2 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	HNRNPK	hsa-miR-30c-5p	chr9:86584206-86584228
2	HNRNPK	hsa-miR-21-5p	chr9:86583583-86583604

Variant related genes	Relation type
KIF27	TF binding region
C9orf64	TF binding region
MIR7-1	TF binding region
RMI1	TF binding region
ENSG00000226877	TF binding region
ENSG00000231616	TF binding region
ENSG00000202523	TF binding region
GKAP1	TF binding region
HNRNPK	TF binding region
ENSG00000235298	TF binding region
KIF27	CpG island
C9orf64	CpG island
MIR7-1	CpG island
RMI1	CpG island
ENSG00000226877	CpG island
ENSG00000231616	CpG island
ENSG00000202523	CpG island
GKAP1	CpG island
HNRNPK	CpG island
ENSG00000235298	CpG island
ENSG00000163882	chromatin interactions
ENSG00000111678	chromatin interactions
ENSG00000184886	chromatin interactions
ENSG00000083223	chromatin interactions
ENSG00000174442	chromatin interactions
ENSG00000182809	chromatin interactions
ENSG00000180771	chromatin interactions
ENSG00000198105	chromatin interactions
ENSG00000197506	chromatin interactions
ENSG00000206597	chromatin interactions
ENSG00000166192	chromatin interactions
ENSG00000164211	chromatin interactions
ENSG00000100219	chromatin interactions
ENSG00000138134	chromatin interactions
ENSG00000178966	chromatin interactions
ENSG00000226471	chromatin interactions
ENSG00000062716	chromatin interactions
ENSG00000141385	chromatin interactions
ENSG00000199377	chromatin interactions
ENSG00000143164	chromatin interactions
ENSG00000105538	chromatin interactions
ENSG00000136950	chromatin interactions
ENSG00000175183	chromatin interactions
ENSG00000223247	chromatin interactions
ENSG00000179523	chromatin interactions
ENSG00000147488	chromatin interactions
ENSG00000225733	chromatin interactions
ENSG00000166441	chromatin interactions
ENSG00000214756	chromatin interactions
ENSG00000134294	chromatin interactions
ENSG00000238923	chromatin interactions
ENSG00000148057	chromatin interactions
ENSG00000163584	chromatin interactions
ENSG00000165119	chromatin interactions
ENSG00000133316	chromatin interactions
ENSG00000165118	chromatin interactions
ENSG00000179604	chromatin interactions
ENSG00000125968	chromatin interactions
ENSG00000237649	chromatin interactions
ENSG00000243660	chromatin interactions
ENSG00000164081	chromatin interactions
ENSG00000124164	chromatin interactions
ENSG00000162004	chromatin interactions
ENSG00000173548	chromatin interactions
ENSG00000179119	chromatin interactions
ENSG00000228393	chromatin interactions
ENSG00000270103	chromatin interactions
ENSG00000113575	chromatin interactions
ENSG00000066933	chromatin interactions
ENSG00000226877	chromatin interactions
ENSG00000241685	chromatin interactions
ENSG00000105939	chromatin interactions
ENSG00000202523	chromatin interactions
ENSG00000265692	chromatin interactions
ENSG00000135018	chromatin interactions
ENSG00000134852	chromatin interactions
ENSG00000165138	chromatin interactions
ENSG00000271885	chromatin interactions
ENSG00000236514	chromatin interactions
ENSG00000165115	chromatin interactions
ENSG00000103253	chromatin interactions
ENSG00000174444	chromatin interactions
ENSG00000055044	chromatin interactions
ENSG00000254473	chromatin interactions
ENSG00000177971	chromatin interactions
ENSG00000177463	chromatin interactions
ENSG00000141140	chromatin interactions
ENSG00000143158	chromatin interactions
ENSG00000229117	chromatin interactions
ENSG00000156508	chromatin interactions
ENSG00000165113	chromatin interactions
HUWE1	Mature miRNA region
CIRH1A	Mature miRNA region
CTC1	Mature miRNA region
TBC1D1	Mature miRNA region
SMS	Mature miRNA region
CDC5L	Mature miRNA region
ZNF792	Mature miRNA region
PDS5B	miRNA target sites
RUNX1	miRNA target sites
RNF182	miRNA target sites
FAM49B	miRNA target sites

Extended variants
information (count: 7096 )
Associated
traits (count: 74 )

Variant overlapped rSNPs/rCNVs (count:7096 , 50 per page) page: 1 2 3 4 5 6 7 ... 142

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs370708410	chr9:86414059-86414060	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs200668470	chr9:86414064-86414065	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs557160076	chr9:86414089-86414090	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs376397993	chr9:86414121-86414122	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs570709929	chr9:86414147-86414148	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs150602176	chr9:86414152-86414153	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs35727306	chr9:86414155-86414156	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs377400261	chr9:86414169-86414170	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs138726345	chr9:86414189-86414190	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs1047191	chr9:86414201-86414202	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs149367905	chr9:86414206-86414207	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs35894992	chr9:86414212-86414213	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs575392343	chr9:86414247-86414248	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs567704992	chr9:86414312-86414313	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs542769995	chr9:86414322-86414323	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs538558072	chr9:86414356-86414357	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs370960679	chr9:86414388-86414389	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs190669453	chr9:86414417-86414418	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs528105896	chr9:86414425-86414426	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs113420908	chr9:86414429-86414430	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs552824475	chr9:86414442-86414443	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs541666512	chr9:86414450-86414451	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs149476127	chr9:86414458-86414459	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs117992678	chr9:86414588-86414589	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs77146144	chr9:86414613-86414614	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs295291	chr9:86414632-86414633	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs4877267	chr9:86414680-86414681	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs182923946	chr9:86414737-86414738	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs549081319	chr9:86414788-86414789	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs187219027	chr9:86414808-86414809	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs192958977	chr9:86414815-86414816	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs547017772	chr9:86414865-86414866	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs571440236	chr9:86414927-86414928	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs201224745	chr9:86414970-86414971	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs144052533	chr9:86415179-86415180	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs556855344	chr9:86415207-86415208	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs36090988	chr9:86415246-86415247	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs11460153	chr9:86415253-86415254	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs375760985	chr9:86415257-86415258	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs72749119	chr9:86415258-86415259	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs554710866	chr9:86415261-86415262	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs112685130	chr9:86415264-86415265	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs141368354	chr9:86415271-86415272	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs62561923	chr9:86415273-86415274	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs573024960	chr9:86415317-86415318	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs184614319	chr9:86415360-86415361	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs578096600	chr9:86415411-86415412	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs564931466	chr9:86415415-86415416	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs188005785	chr9:86415472-86415473	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs574406032	chr9:86415490-86415491	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:74)

Disease	PMID	Source
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Leukemia	18688285	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute myeloid leukemia	21251322	CNVD
Hepatocellular carcinoma	16750200	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral cancer	21386901	CNVD
Glioblastoma multiforme	21750150	CNVD
Cancer	21183584	CNVD
Bipolar disorder	18458673	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Gastric cancer	17908304	CNVD
Urothelial cell carcinoma	18451213	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Renal cell carcinoma	18765545	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Glioblastoma multiforme	22286061	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Lung cancer	20668451	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:3632 , 50 per page) page: 1 2 3 4 5 6 7 ... 73

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86348400-86415400	Weak transcription	Fetal Heart	heart
2	chr9:86350000-86431600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr9:86353000-86432000	Weak transcription	Lung	lung
4	chr9:86363800-86431200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr9:86377200-86432000	Weak transcription	Gastric	stomach
6	chr9:86378400-86418400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr9:86380200-86431600	Weak transcription	Fetal Kidney	kidney
8	chr9:86383600-86425800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr9:86389000-86431600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr9:86392000-86431600	Weak transcription	Psoas Muscle	Psoas
11	chr9:86392000-86431800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr9:86394400-86431600	Weak transcription	Colon Smooth Muscle	Colon
13	chr9:86395000-86416400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr9:86395600-86417400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr9:86397000-86420000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr9:86397400-86415600	Weak transcription	Brain Germinal Matrix	brain
17	chr9:86397400-86419400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr9:86397400-86423400	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr9:86399000-86431000	Weak transcription	A549	lung
20	chr9:86399400-86431000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr9:86399400-86431200	Weak transcription	Fetal Stomach	stomach
22	chr9:86399400-86431400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr9:86399400-86431600	Weak transcription	Right Ventricle	heart
24	chr9:86399400-86431800	Weak transcription	Esophagus	oesophagus
25	chr9:86399400-86431800	Weak transcription	Pancreas	Pancrea
26	chr9:86402800-86431600	Weak transcription	Fetal Brain Female	brain
27	chr9:86406800-86422200	Weak transcription	Spleen	Spleen
28	chr9:86407000-86431600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr9:86407800-86420600	Weak transcription	Primary B cells from cord blood	blood
30	chr9:86408200-86415400	Weak transcription	Hela-S3	cervix
31	chr9:86408200-86431200	Weak transcription	Dnd41	blood
32	chr9:86409000-86414200	Strong transcription	Fetal Thymus	thymus
33	chr9:86409400-86415800	Weak transcription	GM12878-XiMat	blood
34	chr9:86409400-86415800	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr9:86409600-86420600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr9:86409800-86431600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr9:86410000-86423200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr9:86410400-86432000	Weak transcription	Small Intestine	intestine
39	chr9:86411200-86431400	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr9:86411400-86416200	Strong transcription	Liver	Liver
41	chr9:86411600-86414400	Weak transcription	Fetal Brain Male	brain
42	chr9:86411600-86414800	Strong transcription	Fetal Intestine Large	intestine
43	chr9:86411800-86414200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr9:86411800-86414200	Strong transcription	Primary T cells from cord blood	blood
45	chr9:86411800-86414200	Strong transcription	Primary T helper cells fromperipheralblood	blood
46	chr9:86411800-86414200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr9:86411800-86414200	Strong transcription	Duodenum Smooth Muscle	Duodenum
48	chr9:86411800-86414200	Strong transcription	Ovary	ovary
49	chr9:86411800-86414200	Strong transcription	Stomach Smooth Muscle	stomach
50	chr9:86411800-86414600	Strong transcription	Primary hematopoietic stem cells	blood

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