Variant report

Variant	rs376397993
Chromosome Location	chr9:86414121-86414122
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:86402003..86404732-chr9:86411861..86414651,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165113	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893513	chr9:86298632-86433459	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv469859	chr9:86398152-86587957	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv482641	chr9:86398152-86587957	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	esv2761538	chr9:86401015-86451943	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	esv2758192	chr9:86414024-86603602	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
6	esv2759701	chr9:86414024-86603602	Enhancers Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86348400-86415400	Weak transcription	Fetal Heart	heart
2	chr9:86350000-86431600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr9:86353000-86432000	Weak transcription	Lung	lung
4	chr9:86363800-86431200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr9:86377200-86432000	Weak transcription	Gastric	stomach
6	chr9:86378400-86418400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr9:86380200-86431600	Weak transcription	Fetal Kidney	kidney
8	chr9:86383600-86425800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr9:86389000-86431600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr9:86392000-86431600	Weak transcription	Psoas Muscle	Psoas
11	chr9:86392000-86431800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr9:86394400-86431600	Weak transcription	Colon Smooth Muscle	Colon
13	chr9:86395000-86416400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr9:86395600-86417400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr9:86397000-86420000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr9:86397400-86415600	Weak transcription	Brain Germinal Matrix	brain
17	chr9:86397400-86419400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr9:86397400-86423400	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr9:86399000-86431000	Weak transcription	A549	lung
20	chr9:86399400-86431000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr9:86399400-86431200	Weak transcription	Fetal Stomach	stomach
22	chr9:86399400-86431400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr9:86399400-86431600	Weak transcription	Right Ventricle	heart
24	chr9:86399400-86431800	Weak transcription	Esophagus	oesophagus
25	chr9:86399400-86431800	Weak transcription	Pancreas	Pancrea
26	chr9:86402800-86431600	Weak transcription	Fetal Brain Female	brain
27	chr9:86406800-86422200	Weak transcription	Spleen	Spleen
28	chr9:86407000-86431600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr9:86407800-86420600	Weak transcription	Primary B cells from cord blood	blood
30	chr9:86408200-86415400	Weak transcription	Hela-S3	cervix
31	chr9:86408200-86431200	Weak transcription	Dnd41	blood
32	chr9:86409000-86414200	Strong transcription	Fetal Thymus	thymus
33	chr9:86409400-86415800	Weak transcription	GM12878-XiMat	blood
34	chr9:86409400-86415800	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr9:86409600-86420600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr9:86409800-86431600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr9:86410000-86423200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr9:86410400-86432000	Weak transcription	Small Intestine	intestine
39	chr9:86411200-86431400	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr9:86411400-86416200	Strong transcription	Liver	Liver
41	chr9:86411600-86414400	Weak transcription	Fetal Brain Male	brain
42	chr9:86411600-86414800	Strong transcription	Fetal Intestine Large	intestine
43	chr9:86411800-86414200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr9:86411800-86414200	Strong transcription	Primary T cells from cord blood	blood
45	chr9:86411800-86414200	Strong transcription	Primary T helper cells fromperipheralblood	blood
46	chr9:86411800-86414200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr9:86411800-86414200	Strong transcription	Duodenum Smooth Muscle	Duodenum
48	chr9:86411800-86414200	Strong transcription	Ovary	ovary
49	chr9:86411800-86414200	Strong transcription	Stomach Smooth Muscle	stomach
50	chr9:86411800-86414600	Strong transcription	Primary hematopoietic stem cells	blood

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