Variant report

Variant	esv2758376
Chromosome Location	chr15:34543021-34988247
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:7162)
CpG islands
(count:6230)
Chromatin interactive
region (count:270)
LncRNA
region (count:32)
Mature miRNA
region (count: 4)
miRNA target
sites (count:2)

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No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr15:34869965-34870045	HepG2	liver:	n/a	n/a
2	ARID3A	chr15:34953056-34953951	K562	blood:	n/a	n/a
3	ARID3A	chr15:34944080-34945342	K562	blood:	n/a	n/a
4	ARID3A	chr15:34915270-34915290	K562	blood:	n/a	n/a
5	ARID3A	chr15:34913827-34914853	K562	blood:	n/a	chr15:34914367-34914383 chr15:34914368-34914384
6	ARID3A	chr15:34939172-34940883	K562	blood:	n/a	n/a
7	ARID3A	chr15:34952157-34952158	K562	blood:	n/a	n/a
8	ARID3A	chr15:34949658-34950365	K562	blood:	n/a	n/a
9	ARID3A	chr15:34630085-34630347	HepG2	liver:	n/a	n/a
10	ARID3A	chr15:34886706-34886742	K562	blood:	n/a	n/a
11	ARID3A	chr15:34593477-34593641	HepG2	liver:	n/a	chr15:34593519-34593535
12	ARID3A	chr15:34880209-34880840	HepG2	liver:	n/a	n/a
13	ARID3A	chr15:34948740-34948973	K562	blood:	n/a	n/a
14	ARID3A	chr15:34954510-34955719	K562	blood:	n/a	n/a
15	ARID3A	chr15:34650682-34650948	K562	blood:	n/a	n/a
16	ARID3A	chr15:34905532-34905838	K562	blood:	n/a	n/a
17	ARID3A	chr15:34880295-34880915	K562	blood:	n/a	n/a
18	ARID3A	chr15:34929245-34929276	K562	blood:	n/a	n/a
19	ARID3A	chr15:34650075-34650188	K562	blood:	n/a	n/a
20	ARID3A	chr15:34908827-34909205	K562	blood:	n/a	n/a
21	ARID3A	chr15:34635077-34635629	HepG2	liver:	n/a	n/a
22	ARID3A	chr15:34624072-34624459	K562	blood:	n/a	n/a
23	ARID3A	chr15:34902659-34902943	K562	blood:	n/a	n/a
24	ARID3A	chr15:34659927-34660209	HepG2	liver:	n/a	n/a
25	ARID3A	chr15:34628988-34629112	K562	blood:	n/a	n/a
26	ARID3A	chr15:34946314-34948129	K562	blood:	n/a	n/a
27	ARID3A	chr15:34630317-34630551	K562	blood:	n/a	n/a
28	ARID3A	chr15:34731584-34731600	K562	blood:	n/a	n/a
29	ARID3A	chr15:34875226-34875237	K562	blood:	n/a	n/a
30	ARID3A	chr15:34916436-34916602	K562	blood:	n/a	n/a
31	ARID3A	chr15:34781246-34781587	K562	blood:	n/a	n/a
32	ARID3A	chr15:34610679-34611244	HepG2	liver:	n/a	n/a
33	ARID3A	chr15:34659662-34660316	K562	blood:	n/a	n/a
34	ATF1	chr15:34949656-34950320	K562	blood:	n/a	n/a
35	ATF1	chr15:34880295-34880819	K562	blood:	n/a	n/a
36	ATF1	chr15:34609041-34609045	K562	blood:	n/a	n/a
37	ATF1	chr15:34761374-34761389	K562	blood:	n/a	n/a
38	ATF1	chr15:34808283-34808324	K562	blood:	n/a	n/a
39	ATF1	chr15:34985696-34985896	K562	blood:	n/a	n/a
40	ATF1	chr15:34896856-34896884	K562	blood:	n/a	n/a
41	ATF1	chr15:34870112-34870339	K562	blood:	n/a	n/a
42	ATF1	chr15:34913992-34914213	K562	blood:	n/a	n/a
43	ATF1	chr15:34905714-34905797	K562	blood:	n/a	n/a
44	ATF1	chr15:34940100-34940799	K562	blood:	n/a	n/a
45	ATF1	chr15:34947575-34947975	K562	blood:	n/a	n/a
46	ATF1	chr15:34633764-34633880	K562	blood:	n/a	n/a
47	ATF1	chr15:34908847-34909148	K562	blood:	n/a	n/a
48	ATF1	chr15:34946741-34947211	K562	blood:	n/a	n/a
49	ATF1	chr15:34551902-34552161	K562	blood:	n/a	n/a
50	ATF1	chr15:34626286-34626596	K562	blood:	n/a	n/a

(count:6230 , 50 per page) page: 1 2 3 4 5 6 7 ... 125

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:34659687-34659737	MCF-7	breast:	n/a
2	chr15:34611057-34611107	HUVEC	blood vessel:	n/a
3	chr15:34635399-34635449	AG04449	skin:	fetal
4	chr15:34612206-34612256	MCF-7	breast:	n/a
5	chr15:34700272-34700322	AG04450	lung:	fetal
6	chr15:34612505-34612555	T-47D	breast:	n/a
7	chr15:34638511-34638561	NHBE	bronchial:	n/a
8	chr15:34659687-34659737	HepG2	liver:	n/a
9	chr15:34659687-34659737	MCF-7	breast:	n/a
10	chr15:34611057-34611107	HUVEC	blood vessel:	n/a
11	chr15:34635399-34635449	AG04449	skin:	fetal
12	chr15:34612206-34612256	MCF-7	breast:	n/a
13	chr15:34700272-34700322	AG04450	lung:	fetal
14	chr15:34612505-34612555	T-47D	breast:	n/a
15	chr15:34638511-34638561	NHBE	bronchial:	n/a
16	chr15:34659687-34659737	HepG2	liver:	n/a
17	chr15:34875891-34875941	GM12892	blood:	n/a
18	chr15:34635538-34635588	SK-N-SH_RA	brain:	n/a
19	chr15:34634045-34634095	HRCEpiC	kidney:	n/a
20	chr15:34637869-34637919	HCT-116	colon:	n/a
21	chr15:34658812-34658862	AoSMC	blood vessel:	n/a
22	chr15:34630047-34630097	HCM	heart:	n/a
23	chr15:34631762-34631812	SK-N-MC	brain:	n/a
24	chr15:34781969-34782019	SK-N-SH_RA	brain:	n/a
25	chr15:34807221-34807271	HCM	heart:	n/a
26	chr15:34781891-34781941	HAEpiC	amniotic membrane:	n/a
27	chr15:34640711-34640761	ProgFib	skin:	n/a
28	chr15:34611057-34611107	A549	lung:	n/a
29	chr15:34787920-34787970	A549	lung:	n/a
30	chr15:34631762-34631812	HEEpiC	esophagus:	n/a
31	chr15:34876347-34876397	PANC-1	pancreas:	n/a
32	chr15:34807143-34807193	SK-N-MC	brain:	n/a
33	chr15:34874862-34874912	SK-N-MC	brain:	n/a
34	chr15:34628815-34628865	IMR90	lung:	fetal
35	chr15:34640893-34640943	GM12891	blood:	n/a
36	chr15:34877407-34877457	LNCaP	prostate:	n/a
37	chr15:34629953-34630003	HAEpiC	amniotic membrane:	n/a
38	chr15:34875138-34875188	AG09319	gingival:	n/a
39	chr15:34874183-34874233	HNPCEpiC	eye:	n/a
40	chr15:34659687-34659737	ECC-1	luminal epithelium:	n/a
41	chr15:34729026-34729076	MCF-7	breast:	n/a
42	chr15:34660076-34660126	ECC-1	luminal epithelium:	n/a
43	chr15:34659687-34659737	HEEpiC	esophagus:	n/a
44	chr15:34611069-34611119	ovcar-3	ovarian:	n/a
45	chr15:34611057-34611107	HIPEpiC	eye:	n/a
46	chr15:34785380-34785430	K562	blood:	n/a
47	chr15:34729115-34729165	Hepatocyte	liver:	n/a
48	chr15:34611069-34611119	HRPEpiC	eye:	n/a
49	chr15:34781969-34782019	MCF10A-Er-Src	breast:	n/a
50	chr15:34630351-34630401	ECC-1	luminal epithelium:	n/a

(count:270 , 50 per page) page: 1 2 3 4 5 6

No.	Distal block	Cell Line	Cell type
1	chr15:34612507..34614657-chr15:34617992..34620776,2	MCF-7	breast:
2	chr15:34658214..34660711-chr15:34806608..34809602,2	K562	blood:
3	chr1:28558832..28559607-chr15:34634683..34635340,2	Hela-S3	cervix:
4	chr15:34516892..34518970-chr15:34542001..34544028,2	K562	blood:
5	chr15:34941344..34943269-chr15:34977002..34979213,2	K562	blood:
6	chr15:34642499..34645200-chr15:34648396..34650653,3	K562	blood:
7	chr15:34962434..34964585-chr15:34966364..34969710,3	K562	blood:
8	chr15:34913307..34914991-chr15:34929235..34931577,2	K562	blood:
9	chr15:34953489..34955951-chr15:35181219..35183157,2	K562	blood:
10	chr15:34633931..34636680-chr15:34728775..34730381,2	K562	blood:
11	chr15:34759701..34761289-chr15:34761464..34762969,2	K562	blood:
12	chr15:34626796..34628377-chr15:34649112..34652053,2	MCF-7	breast:
13	chr15:34729318..34730097-chr5:1799590..1800354,2	Hela-S3	cervix:
14	chr15:34632008..34636763-chr15:34655757..34660926,8	K562	blood:
15	chr15:34351759..34355755-chr15:34876768..34880095,3	K562	blood:
16	chr15:34770080..34772217-chr15:34772786..34775252,2	K562	blood:
17	chr15:34616765..34618642-chr15:34621899..34624086,2	K562	blood:
18	chr15:34654880..34657124-chr15:34662673..34664645,2	MCF-7	breast:
19	chr15:34531119..34534573-chr15:34628473..34631118,3	MCF-7	breast:
20	chr15:34728587..34731061-chr15:34780506..34783189,2	K562	blood:
21	chr15:34515820..34518714-chr15:34632646..34635084,3	MCF-7	breast:
22	chr15:34933035..34934548-chr15:34938251..34939915,2	K562	blood:
23	chr15:34654804..34656714-chr15:34658910..34661703,3	K562	blood:
24	chr15:34553058..34555521-chr15:34561938..34565007,3	K562	blood:
25	chr15:34615241..34617127-chr15:34618598..34620294,2	K562	blood:
26	chr15:34907702..34910411-chr15:34952455..34954523,2	K562	blood:
27	chr15:34965188..34969119-chr15:34970987..34974956,6	K562	blood:
28	chr15:34536523..34539176-chr15:34546816..34548491,2	K562	blood:
29	chr15:34634087..34636610-chr15:34652468..34654209,2	MCF-7	breast:
30	chr15:34655711..34662054-chr15:34662110..34667087,9	K562	blood:
31	chr15:34539135..34541437-chr15:34542575..34545570,3	K562	blood:
32	chr15:34908586..34909269-chr15:35212549..35213068,2	MCF-7	breast:
33	chr15:34898803..34900649-chr15:34905656..34908079,2	K562	blood:
34	chr15:34603925..34606336-chr15:34608232..34610231,2	K562	blood:
35	chr1:20812111..20812967-chr15:34659407..34660267,2	HCT-116	colon:
36	chr15:34568431..34570123-chr15:34573544..34575147,2	K562	blood:
37	chr15:34543302..34545799-chr15:34603176..34605145,2	K562	blood:
38	chr15:34536358..34538265-chr15:34542430..34544834,2	K562	blood:
39	chr15:34616765..34618642-chr15:34621899..34624086,2	K562	blood:
40	chr15:34628679..34631455-chr15:34874185..34875808,2	K562	blood:
41	chr15:34635280..34637526-chr15:34658001..34660457,2	K562	blood:
42	chr15:34392784..34394847-chr15:34629052..34631553,2	K562	blood:
43	chr15:34330963..34332496-chr15:34876229..34877827,2	K562	blood:
44	chr15:34604526..34606591-chr15:34629720..34631424,2	MCF-7	breast:
45	chr15:34965205..34967093-chr15:34977923..34979811,2	K562	blood:
46	chr15:34558780..34560972-chr15:34563410..34565603,2	K562	blood:
47	chr15:34513565..34517614-chr15:34877827..34881077,3	K562	blood:
48	chr15:34659566..34660339-chr15:34879136..34879733,2	MCF-7	breast:
49	chr15:34727581..34729084-chr15:34874171..34876472,2	MCF-7	breast:
50	chr15:34931128..34933994-chr15:34934903..34936649,2	K562	blood:

(count:32 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C15orf55-1	chr15:34628609-34630155	NONHSAT041578
2	lnc-GJD2-4	chr15:34845946-34846157	NONHSAT140232
3	lnc-GOLGA8B-1	chr15:34752685-34752950	uc_384_-
4	lnc-C15orf55-4	chr15:34752685-34752950	uc_384_+
5	lnc-GJD2-1	chr15:34967556-34967834	XLOC_011422
6	lnc-GJD2-4	chr15:34867026-34867115	NONHSAT041596
7	lnc-GOLGA8A-1	chr15:34962302-34962370	XLOC_011421
8	lnc-GOLGA8A-1	chr15:34943936-34946139	ucscGeneNc_uc001zji_1
9	lnc-GOLGA8A-1	chr15:34948237-34948332	ucscGeneNc_uc001zji_1
10	lnc-GJD2-4	chr15:34845946-34846157	NONHSAT041596
11	lnc-GJD2-3	chr15:34858091-34858674	NONHSAT041597
12	lnc-GJD2-4	chr15:34875717-34875835	NONHSAT041596
13	lnc-AC114546.1-12	chr15:34988228-34988460	NONHSAT041602
14	lnc-LPCAT4-1	chr15:34698878-34699071	NONHSAT041586
15	lnc-GJD2-4	chr15:34843392-34843477	NONHSAT140232
16	lnc-GOLGA8A-1	chr15:34947820-34947978	XLOC_011421
17	lnc-GOLGA8A-1	chr15:34947820-34947965	ENSG00000261304.1
18	lnc-AC114546.1-12	chr15:34982173-34982277	NONHSAT041602
19	lnc-AC114546.1-13	chr15:34972962-34973170	uc_385_+
20	lnc-GOLGA8A-1	chr15:34946499-34946618	ENSG00000261304.1
21	lnc-GOLGA8A-1	chr15:34943885-34943977	ENSG00000261304.1
22	lnc-C15orf55-1	chr15:34632408-34632569	NONHSAT041578
23	lnc-GJD2-2	chr15:34972962-34973170	uc_385_-
24	lnc-LPCAT4-1	chr15:34720816-34721126	NONHSAT041586
25	lnc-GJD2-4	chr15:34873667-34873700	NONHSAT140232
26	lnc-GOLGA8A-1	chr15:34943336-34943463	ENSG00000261304.1
27	lnc-GJD2-4	chr15:34845174-34845292	NONHSAT041596
28	lnc-LPCAT4-1	chr15:34699777-34699936	NONHSAT041586
29	lnc-GJD2-3	chr15:34874951-34875061	NONHSAT041597
30	lnc-C15orf55-2	chr15:34607219-34607487	uc_383_+
31	lnc-GJD2-4	chr15:34845096-34845292	NONHSAT140232
32	lnc-NOP10-1	chr15:34607219-34607487	uc_383_-

miRNA name	Chromosome Location	mirBase accession
hsa-miR-1233-5p	chr15:34820548-34820569	MIMAT0022943_1
hsa-miR-1233-5p	chr15:34674327-34674348	MIMAT0022943
hsa-miR-1233-3p	chr15:34820491-34820510	MIMAT0005588_1
hsa-miR-1233-3p	chr15:34674270-34674289	MIMAT0005588

(count:2 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	GOLGA8B	hsa-miR-15a-5p	chr15:34817527-34817548
2	GOLGA8B	hsa-miR-32-5p	chr15:34818291-34818311

Variant related genes	Relation type
MIR1233-1	TF binding region
LPCAT4	TF binding region
ENSG00000261081	TF binding region
NUTM1	TF binding region
ENSG00000259468	TF binding region
ENSG00000261304	TF binding region
ENSG00000261559	TF binding region
SLC12A6	TF binding region
MIR1233-2	TF binding region
ENSG00000259892	TF binding region
ENSG00000260639	TF binding region
ENSG00000259904	TF binding region
GOLGA8A	TF binding region
ENSG00000207091	TF binding region
HNRNPLP2	TF binding region
NOP10	TF binding region
ENSG00000252425	TF binding region
GOLGA8B	TF binding region
ENSG00000266205	TF binding region
MIR1233-1	CpG island
LPCAT4	CpG island
ENSG00000261081	CpG island
NUTM1	CpG island
ENSG00000259468	CpG island
ENSG00000261304	CpG island
ENSG00000261559	CpG island
SLC12A6	CpG island
MIR1233-2	CpG island
ENSG00000259892	CpG island
ENSG00000260639	CpG island
ENSG00000259904	CpG island
GOLGA8A	CpG island
ENSG00000207091	CpG island
HNRNPLP2	CpG island
NOP10	CpG island
ENSG00000252425	CpG island
GOLGA8B	CpG island
ENSG00000266205	CpG island
ENSG00000134153	chromatin interactions
ENSG00000188483	chromatin interactions
ENSG00000164941	chromatin interactions
ENSG00000176454	chromatin interactions
ENSG00000248668	chromatin interactions
ENSG00000182117	chromatin interactions
ENSG00000136877	chromatin interactions
ENSG00000134152	chromatin interactions
ENSG00000169857	chromatin interactions
ENSG00000171421	chromatin interactions
ENSG00000185085	chromatin interactions
ENSG00000196866	chromatin interactions
ENSG00000259468	chromatin interactions
ENSG00000198146	chromatin interactions
ENSG00000133316	chromatin interactions
ENSG00000100558	chromatin interactions
ENSG00000184009	chromatin interactions
ENSG00000126698	chromatin interactions
ENSG00000197846	chromatin interactions
ENSG00000197409	chromatin interactions
ENSG00000013306	chromatin interactions
ENSG00000184507	chromatin interactions
ENSG00000075618	chromatin interactions
ENSG00000162545	chromatin interactions
ENSG00000200997	chromatin interactions
ENSG00000182405	chromatin interactions
ENSG00000266205	chromatin interactions
ENSG00000175265	chromatin interactions
ENSG00000128463	chromatin interactions
ENSG00000140199	chromatin interactions
ENSG00000207091	chromatin interactions
ENSG00000083720	chromatin interactions
ENSG00000261304	chromatin interactions
ENSG00000215252	chromatin interactions
ENSG00000259917	chromatin interactions
ENSG00000259904	chromatin interactions
NEK7	miRNA target sites
NEK9	miRNA target sites

Extended variants
information (count: 14656 )
Associated
traits (count: 73 )

Variant overlapped rSNPs/rCNVs (count:14656 , 50 per page) page: 1 2 3 4 5 6 7 ... 294

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs10851964	chr15:34543055-34543056	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs146101606	chr15:34543062-34543063	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs373077646	chr15:34543108-34543109	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs75162601	chr15:34543144-34543145	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs200403709	chr15:34543167-34543168	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs144954522	chr15:34543172-34543173	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs370477960	chr15:34543175-34543176	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs140916001	chr15:34543180-34543181	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs558676261	chr15:34543185-34543186	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs2705339	chr15:34543195-34543196	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs372710448	chr15:34543218-34543219	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs11382535	chr15:34543298-34543299	Weak transcription Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
13	rs397703969	chr15:34543308-34543309	Weak transcription Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
14	rs200363263	chr15:34543309-34543310	Weak transcription Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
15	rs577013846	chr15:34543310-34543311	Weak transcription Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
16	rs187779681	chr15:34543331-34543332	Weak transcription Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
17	rs556221559	chr15:34543345-34543346	Weak transcription Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
18	rs140089726	chr15:34543355-34543356	Weak transcription Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
19	rs192029440	chr15:34543358-34543359	Weak transcription Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
20	rs536579374	chr15:34543370-34543371	Weak transcription Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
21	rs560205834	chr15:34543386-34543387	Weak transcription Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
22	rs572132695	chr15:34543387-34543388	Weak transcription Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
23	rs545584078	chr15:34543394-34543395	Weak transcription Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
24	rs550516128	chr15:34543403-34543404	Weak transcription Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
25	rs143661374	chr15:34543449-34543450	Weak transcription Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
26	rs369116311	chr15:34543453-34543454	Weak transcription Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
27	rs560957824	chr15:34543500-34543501	Weak transcription Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
28	rs530203158	chr15:34543592-34543593	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs111674679	chr15:34543594-34543595	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs562071853	chr15:34543598-34543599	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs113731887	chr15:34543606-34543607	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs28451106	chr15:34543612-34543613	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs547350307	chr15:34543632-34543633	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs566821429	chr15:34543633-34543634	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs533416810	chr15:34543639-34543640	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs551625634	chr15:34543650-34543651	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs192341375	chr15:34543680-34543681	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
38	rs537675371	chr15:34543682-34543683	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
39	rs28446562	chr15:34543708-34543709	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
40	rs146305750	chr15:34543737-34543738	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
41	rs568327146	chr15:34543820-34543821	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
42	rs184497374	chr15:34544018-34544019	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
43	rs535759432	chr15:34544030-34544031	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs187304223	chr15:34544070-34544071	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs114678059	chr15:34544106-34544107	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs2705109	chr15:34544115-34544116	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs545873415	chr15:34544169-34544170	Weak transcription Strong transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
48	rs78669274	chr15:34544188-34544189	Weak transcription Strong transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs557602536	chr15:34544189-34544190	Weak transcription Strong transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs2244040	chr15:34544190-34544191	Weak transcription Strong transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance

Variant related diseases (count:73)

Disease	PMID	Source
HDAC8	0	CNVD
NIPBL	0	CNVD
RAD21	0	CNVD
SMC1A	0	CNVD
SMC3	0	CNVD
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Angelman syndrome	16183798	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16774939	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
Hodgkin''s lymphoma	17606441	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	17133270	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21785460	CNVD
Abnormal corpus callosum	21572526	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Autism	19204725	CNVD
Schizophrenia	19204725	CNVD
Schizophrenia	19149910	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Legius syndrome	19443465	CNVD
Holoprosencephaly	21359414	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Prader-willi syndrome	21504564	CNVD
Cancer	17440070	CNVD
Basal cell lymphoma	17053054	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Cancer	20164919	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
lymphocytic leukemia	21291569	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:6593 , 50 per page) page: 1 2 3 4 5 6 7 ... 132

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34518000-34571800	Weak transcription	Stomach Mucosa	stomach
2	chr15:34518800-34548200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr15:34519000-34552400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr15:34519200-34552200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr15:34519200-34553600	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr15:34519400-34552200	Strong transcription	Primary T cells fromperipheralblood	blood
7	chr15:34519400-34552200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr15:34519600-34544200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr15:34519600-34553600	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr15:34519800-34544800	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr15:34520200-34555600	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr15:34521000-34547800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr15:34523000-34545600	Weak transcription	Dnd41	blood
14	chr15:34524200-34552400	Strong transcription	Primary B cells from cord blood	blood
15	chr15:34524800-34553600	Strong transcription	Primary B cells from peripheral blood	blood
16	chr15:34528400-34546400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr15:34528400-34547400	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr15:34528600-34554600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr15:34529000-34543800	Weak transcription	Right Ventricle	heart
20	chr15:34529000-34554800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr15:34529200-34544000	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr15:34529200-34546000	Weak transcription	Gastric	stomach
23	chr15:34529200-34550400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr15:34529200-34552200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr15:34529800-34544000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr15:34529800-34546200	Weak transcription	Esophagus	oesophagus
27	chr15:34531400-34546000	Weak transcription	Spleen	Spleen
28	chr15:34531400-34546400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr15:34532000-34546000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr15:34532600-34543800	Weak transcription	HSMM	muscle
31	chr15:34533000-34544200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr15:34533000-34545800	Weak transcription	Hela-S3	cervix
33	chr15:34533000-34548400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr15:34533000-34555600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr15:34533000-34556600	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr15:34533000-34564000	Weak transcription	NHLF	lung
37	chr15:34533200-34544000	Weak transcription	Fetal Lung	lung
38	chr15:34533200-34544000	Weak transcription	NHDF-Ad	bronchial
39	chr15:34533200-34547200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr15:34533200-34548200	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr15:34533200-34549400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr15:34533200-34551200	Strong transcription	Primary T helper cells PMA-I stimulated	--
43	chr15:34533200-34557400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr15:34533200-34562800	Weak transcription	Pancreas	Pancrea
45	chr15:34533400-34545200	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr15:34534000-34546400	Weak transcription	Fetal Kidney	kidney
47	chr15:34534400-34546400	Weak transcription	Fetal Heart	heart
48	chr15:34534800-34544800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr15:34535200-34552200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr15:34535400-34551200	Strong transcription	Duodenum Mucosa	Duodenum

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