Variant report

Variant	esv2759432
Chromosome Location	chr6:57184541-57562604
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4185)
CpG islands
(count:976)
Chromatin interactive
region (count:107)
LncRNA
region (count:7)
Mature miRNA
region (count: 1)
miRNA target
sites (count:0)

(count:4185 , 50 per page) page: 1 2 3 4 5 6 7 ... 84

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:57189425-57189669	HepG2	liver:	n/a	n/a
2	ARID3A	chr6:57445471-57445872	HepG2	liver:	n/a	n/a
3	ARID3A	chr6:57364923-57365929	HepG2	liver:	n/a	n/a
4	ARID3A	chr6:57392130-57392164	HepG2	liver:	n/a	n/a
5	ARID3A	chr6:57236576-57237274	HepG2	liver:	n/a	n/a
6	ARID3A	chr6:57445284-57445884	K562	blood:	n/a	n/a
7	ATF1	chr6:57386257-57386379	K562	blood:	n/a	n/a
8	ATF1	chr6:57487670-57487865	K562	blood:	n/a	n/a
9	ATF1	chr6:57529957-57530116	K562	blood:	n/a	n/a
10	ATF1	chr6:57432706-57432903	K562	blood:	n/a	n/a
11	ATF1	chr6:57296724-57296768	K562	blood:	n/a	n/a
12	ATF1	chr6:57483779-57483974	K562	blood:	n/a	n/a
13	ATF1	chr6:57483250-57483369	K562	blood:	n/a	n/a
14	ATF1	chr6:57329848-57330048	K562	blood:	n/a	n/a
15	ATF1	chr6:57414346-57414465	K562	blood:	n/a	n/a
16	ATF1	chr6:57422764-57422956	K562	blood:	n/a	n/a
17	ATF1	chr6:57433964-57434331	K562	blood:	n/a	n/a
18	ATF1	chr6:57388328-57388901	K562	blood:	n/a	n/a
19	ATF2	chr6:57288321-57288802	H1-hESC	embryonic stem cell:	n/a	n/a
20	ATF2	chr6:57288167-57288786	H1-hESC	embryonic stem cell:	n/a	n/a
21	BACH1	chr6:57228847-57228853	K562	blood:	n/a	n/a
22	BACH1	chr6:57337567-57337643	K562	blood:	n/a	n/a
23	BACH1	chr6:57439570-57440015	H1-hESC	embryonic stem cell:	n/a	n/a
24	BACH1	chr6:57486231-57486242	H1-hESC	embryonic stem cell:	n/a	n/a
25	BACH1	chr6:57364094-57364109	H1-hESC	embryonic stem cell:	n/a	n/a
26	BACH1	chr6:57526352-57526945	H1-hESC	embryonic stem cell:	n/a	n/a
27	BACH1	chr6:57541125-57541357	H1-hESC	embryonic stem cell:	n/a	n/a
28	BACH1	chr6:57305657-57305828	H1-hESC	embryonic stem cell:	n/a	n/a
29	BACH1	chr6:57501831-57501836	K562	blood:	n/a	n/a
30	BACH1	chr6:57363671-57363854	K562	blood:	n/a	n/a
31	BACH1	chr6:57334050-57334159	H1-hESC	embryonic stem cell:	n/a	n/a
32	BACH1	chr6:57388299-57388865	K562	blood:	n/a	n/a
33	BACH1	chr6:57545381-57545540	H1-hESC	embryonic stem cell:	n/a	n/a
34	BACH1	chr6:57419536-57419915	H1-hESC	embryonic stem cell:	n/a	n/a
35	BACH1	chr6:57350106-57350125	K562	blood:	n/a	n/a
36	BACH1	chr6:57269047-57269216	H1-hESC	embryonic stem cell:	n/a	n/a
37	BACH1	chr6:57408878-57409078	H1-hESC	embryonic stem cell:	n/a	n/a
38	BACH1	chr6:57488136-57488168	H1-hESC	embryonic stem cell:	n/a	n/a
39	BACH1	chr6:57365814-57365865	K562	blood:	n/a	n/a
40	BACH1	chr6:57288493-57288790	H1-hESC	embryonic stem cell:	n/a	n/a
41	BATF	chr6:57215182-57215534	GM12878	blood:	n/a	n/a
42	BATF	chr6:57213914-57214212	GM12878	blood:	n/a	n/a
43	BATF	chr6:57254076-57254287	GM12878	blood:	n/a	chr6:57254189-57254200
44	BCL11A	chr6:57284708-57285068	GM12878	blood:	n/a	n/a
45	BCL11A	chr6:57288294-57288755	H1-hESC	embryonic stem cell:	n/a	n/a
46	BCL11A	chr6:57284786-57285093	GM12878	blood:	n/a	n/a
47	BCL11A	chr6:57288290-57288688	H1-hESC	embryonic stem cell:	n/a	n/a
48	BHLHE40	chr6:57474969-57474972	K562	blood:	n/a	n/a
49	BHLHE40	chr6:57284768-57285156	GM12878	blood:	n/a	n/a
50	BHLHE40	chr6:57450923-57451339	A549	lung:	n/a	n/a

(count:976 , 50 per page) page: 1 2 3 4 5 6 7 ... 20

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:57245939-57245989	AoSMC	blood vessel:	n/a
2	chr6:57359134-57359184	GM06990	blood:	n/a
3	chr6:57350270-57350320	SK-N-MC	brain:	n/a
4	chr6:57335405-57335455	HCPEpiC	choroid plexus:	n/a
5	chr6:57306409-57306459	AG04449	skin:	fetal
6	chr6:57245939-57245989	PrEC	prostate:	n/a
7	chr6:57288411-57288461	AG10803	skin:	n/a
8	chr6:57272398-57272448	GM06990	blood:	n/a
9	chr6:57245939-57245989	ovcar-3	ovarian:	n/a
10	chr6:57272398-57272448	PrEC	prostate:	n/a
11	chr6:57253598-57253648	HRE	kidney:	n/a
12	chr6:57339858-57339908	AG09309	skin:	n/a
13	chr6:57385844-57385894	HL-60	blood:	n/a
14	chr6:57339858-57339908	PANC-1	pancreas:	n/a
15	chr6:57305889-57305939	LNCaP	prostate:	n/a
16	chr6:57447898-57447948	NT2-D1	testis:	n/a
17	chr6:57447898-57447948	GM12878	blood:	n/a
18	chr6:57253598-57253648	HepG2	liver:	n/a
19	chr6:57384347-57384397	SKMC	muscle:	n/a
20	chr6:57305889-57305939	K562	blood:	n/a
21	chr6:57447898-57447948	AoSMC	blood vessel:	n/a
22	chr6:57359134-57359184	MCF-7	breast:	n/a
23	chr6:57391815-57391865	HRE	kidney:	n/a
24	chr6:57447898-57447948	HEEpiC	esophagus:	n/a
25	chr6:57447898-57447948	AG04450	lung:	fetal
26	chr6:57447898-57447948	SKMC	muscle:	n/a
27	chr6:57339858-57339908	NT2-D1	testis:	n/a
28	chr6:57335405-57335455	ECC-1	luminal epithelium:	n/a
29	chr6:57359134-57359184	HMEC	breast:	n/a
30	chr6:57339858-57339908	HRPEpiC	eye:	n/a
31	chr6:57350270-57350320	AG04450	lung:	fetal
32	chr6:57253598-57253648	HMEC	breast:	n/a
33	chr6:57359134-57359184	ovcar-3	ovarian:	n/a
34	chr6:57335405-57335455	RPTEC	kidney:	n/a
35	chr6:57306409-57306459	HCM	heart:	n/a
36	chr6:57339858-57339908	RPTEC	kidney:	n/a
37	chr6:57235407-57235457	CMK	blood:	n/a
38	chr6:57272398-57272448	Hepatocyte	liver:	n/a
39	chr6:57359134-57359184	HNPCEpiC	eye:	n/a
40	chr6:57245939-57245989	H1-hESC	embryonic stem cell:	embryo
41	chr6:57384347-57384397	SK-N-MC	brain:	n/a
42	chr6:57359134-57359184	HCT-116	colon:	n/a
43	chr6:57350270-57350320	NHBE	bronchial:	n/a
44	chr6:57385844-57385894	U87	brain:	n/a
45	chr6:57235407-57235457	MCF10A-Er-Src	breast:	n/a
46	chr6:57306409-57306459	BJ	skin:	n/a
47	chr6:57385844-57385894	AG04450	lung:	fetal
48	chr6:57306409-57306459	NT2-D1	testis:	n/a
49	chr6:57272398-57272448	T-47D	breast:	n/a
50	chr6:57384347-57384397	IMR90	lung:	fetal

(count:107 , 50 per page) page: 1 2 3

No.	Distal block	Cell Line	Cell type
1	chr6:57394320..57396660-chr6:58286293..58287831,2	MCF-7	breast:
2	chr6:57445326..57445995-chr6:57539539..57540106,2	MCF-7	breast:
3	chr6:57344628..57347602-chr6:57348060..57349813,2	K562	blood:
4	chr6:57358740..57361214-chr6:57362213..57364300,2	K562	blood:
5	chr6:57460058..57461813-chr6:57464595..57467531,2	MCF-7	breast:
6	chr6:57396857..57397774-chr9:95368803..95369303,2	MCF-7	breast:
7	chr6:57285506..57287843-chr6:57289585..57292088,2	MCF-7	breast:
8	chr6:57217129..57218039-chr6:57539079..57539990,3	MCF-7	breast:
9	chr6:57302195..57303819-chr6:57305158..57307849,2	MCF-7	breast:
10	chr6:57297598..57300578-chr6:57301764..57305557,4	K562	blood:
11	chr6:57413449..57416181-chr6:57416496..57418603,2	K562	blood:
12	chr6:57460058..57461813-chr6:57464595..57467531,2	MCF-7	breast:
13	chr6:57214841..57217586-chr6:57224303..57226247,2	K562	blood:
14	chr6:57197771..57200072-chr6:57204216..57205882,2	K562	blood:
15	chr6:57232895..57235001-chr6:57373838..57375777,2	K562	blood:
16	chr6:57472415..57474751-chr6:57478817..57480386,2	K562	blood:
17	chr6:57285506..57287843-chr6:57289585..57292088,2	MCF-7	breast:
18	chr6:57188094..57190184-chr6:57192296..57194436,2	MCF-7	breast:
19	chr6:57225893..57228835-chr6:57230897..57233508,2	K562	blood:
20	chr6:57393591..57395977-chr6:57407320..57409957,2	MCF-7	breast:
21	chr6:57368098..57370585-chr6:57379961..57384432,3	K562	blood:
22	chr6:57472415..57474751-chr6:57478817..57480386,2	K562	blood:
23	chr6:57302195..57303819-chr6:57305158..57307849,2	MCF-7	breast:
24	chr6:57182975..57187891-chr6:57191602..57197743,6	K562	blood:
25	chr6:57393591..57395977-chr6:57407320..57409957,2	MCF-7	breast:
26	chr6:57445326..57445995-chr6:57539539..57540106,2	MCF-7	breast:
27	chr6:57358740..57361214-chr6:57362213..57364300,2	K562	blood:
28	chr6:57187827..57190385-chr6:57223942..57226286,2	MCF-7	breast:
29	chr6:57226391..57228337-chr6:57232279..57234513,2	K562	blood:
30	chr6:57184109..57185924-chr6:57191382..57194380,2	K562	blood:
31	chr6:57198328..57200503-chr6:57228180..57229836,2	K562	blood:
32	chr6:57421846..57424167-chr6:57427801..57430462,3	MCF-7	breast:
33	chr6:57445250..57446013-chr6:57537509..57538705,3	MCF-7	breast:
34	chr6:57386101..57388103-chr6:57389445..57391300,2	K562	blood:
35	chr6:56769552..56770203-chr6:57189093..57189825,2	MCF-7	breast:
36	chr6:57445250..57446013-chr6:57537509..57538705,3	MCF-7	breast:
37	chr6:57209967..57212539-chr6:57213014..57215856,3	MCF-7	breast:
38	chr6:57184109..57185924-chr6:57191382..57194380,2	K562	blood:
39	chr6:57182878..57185696-chr6:57187760..57190457,2	MCF-7	breast:
40	chr6:57413449..57416181-chr6:57416496..57418603,2	K562	blood:
41	chr6:57229138..57231697-chr6:57233407..57236328,3	K562	blood:
42	chr6:57429189..57431102-chr6:57440501..57442862,2	MCF-7	breast:
43	chr6:57183026..57185889-chr6:57188123..57191219,3	K562	blood:
44	chr4:92702026..92702759-chr6:57445422..57446224,2	MCF-7	breast:
45	chr6:57371365..57373576-chr6:57373848..57375922,2	K562	blood:
46	chr6:57293162..57295571-chr6:57300739..57302981,3	K562	blood:
47	chr6:57209967..57212539-chr6:57213014..57215856,3	MCF-7	breast:
48	chr6:57198328..57200503-chr6:57228180..57229836,2	K562	blood:
49	chr6:57182240..57183797-chr6:57184315..57185904,2	MCF-7	breast:
50	chr6:57349293..57351634-chr6:57356907..57359151,3	MCF-7	breast:

(count:7 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BAG2-1	chr6:57362331-57362565	ENSG00000266579.1
2	lnc-RAB23-9	chr6:57235203-57235424	ucscGeneNc_uc003pdu_1
3	lnc-RAB23-9	chr6:57233281-57234474	ucscGeneNc_uc003pdu_1
4	lnc-BAG2-1	chr6:57358736-57358845	ENSG00000266579.1
5	lnc-RAB23-12	chr6:57551484-57551584	NONHSAT113297
6	lnc-RAB23-12	chr6:57543887-57544127	NONHSAT113297
7	lnc-RAB23-9	chr6:57236060-57236103	ucscGeneNc_uc003pdu_1

miRNA name	Chromosome Location	mirBase accession
hsa-miR-548u	chr6:57254978-57255000	MIMAT0015013

No data

Variant related genes	Relation type
MIR548U	TF binding region
PRIM2	TF binding region
ENSG00000266579	TF binding region
MIR548U	CpG island
PRIM2	CpG island
ENSG00000266579	CpG island
ENSG00000151914	chromatin interactions
ENSG00000263745	chromatin interactions
ENSG00000215190	chromatin interactions
ENSG00000266579	chromatin interactions
ENSG00000151917	chromatin interactions
ENSG00000146143	chromatin interactions

Extended variants
information (count: 22139 )
Associated
traits (count: 82 )

Variant overlapped rSNPs/rCNVs (count:22139 , 50 per page) page: 1 2 3 4 5 6 7 ... 443

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs182834473	chr6:57184612-57184613	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs374181436	chr6:57184632-57184633	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs537940468	chr6:57184760-57184761	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs374736835	chr6:57184803-57184804	Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs546102030	chr6:57184833-57184834	Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs564018714	chr6:57184834-57184835	Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs148961039	chr6:57184859-57184860	Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs1618210	chr6:57184879-57184880	Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs544707007	chr6:57184922-57184923	Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs561700241	chr6:57184963-57184964	Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs529353569	chr6:57184994-57184995	Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs187597015	chr6:57185005-57185006	Strong transcription Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs143525361	chr6:57185017-57185018	Strong transcription Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs539622028	chr6:57185041-57185042	Strong transcription Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs552088405	chr6:57185091-57185092	Strong transcription Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs567163534	chr6:57185101-57185102	Strong transcription Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs138032220	chr6:57185181-57185182	Strong transcription Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs553009902	chr6:57185188-57185189	Strong transcription Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs200539668	chr6:57185244-57185245	Strong transcription Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs202076235	chr6:57185266-57185267	Strong transcription Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs574446552	chr6:57185316-57185317	Strong transcription Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs369732032	chr6:57185322-57185323	Strong transcription Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs535553308	chr6:57185333-57185334	Strong transcription Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs202065947	chr6:57185345-57185346	Strong transcription Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs556753573	chr6:57185360-57185361	Strong transcription Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs575424407	chr6:57185367-57185368	Strong transcription Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs28760603	chr6:57185370-57185371	Strong transcription Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs28452839	chr6:57185372-57185373	Strong transcription Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs375121976	chr6:57185373-57185374	Strong transcription Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs141052880	chr6:57185400-57185401	Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs57731727	chr6:57185500-57185501	Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs191975904	chr6:57185503-57185504	Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs371556027	chr6:57185543-57185544	Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs572804027	chr6:57185584-57185585	Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs34543302	chr6:57185594-57185595	Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs35450388	chr6:57185620-57185621	Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs540095407	chr6:57185635-57185636	Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs561759742	chr6:57185657-57185658	Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs529240739	chr6:57185659-57185660	Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs565171863	chr6:57185663-57185664	Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs144878958	chr6:57185674-57185675	Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs117498813	chr6:57185678-57185679	Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs553748626	chr6:57185691-57185692	Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs374376476	chr6:57185737-57185738	Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs116882797	chr6:57185740-57185741	Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs567026193	chr6:57185758-57185759	Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs1755834	chr6:57185839-57185840	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs549664301	chr6:57185852-57185853	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs372360606	chr6:57185858-57185859	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs568084883	chr6:57185881-57185882	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:82)

Disease	PMID	Source
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	21080181	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	21858162	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Urothelial carcinoma	18382360	CNVD
Cancer	21183584	CNVD
small cell lung cancer	20016488	CNVD
Gastric cancer	17908304	CNVD
Neuroblastoma	16790693	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Lung cancer	18438408	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Systemic lupus erythematosus	17503323	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Breast cancer	16608533	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
lymphocytic leukemia	21291569	CNVD
Breast cancer	21509527	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ovarian cancer	21781307	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Cancer	20164919	CNVD
Intellectual disability	21811512	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Glioma	20126413	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:3886 , 50 per page) page: 1 2 3 4 5 6 7 ... 78

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:57182800-57191200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:57182800-57192600	Weak transcription	Aorta	Aorta
3	chr6:57182800-57194200	Weak transcription	Small Intestine	intestine
4	chr6:57183000-57185000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr6:57183000-57185200	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr6:57183000-57185400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr6:57183000-57185600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr6:57183000-57185600	Weak transcription	Right Ventricle	heart
9	chr6:57183000-57191400	Weak transcription	Lung	lung
10	chr6:57183000-57192600	Weak transcription	Esophagus	oesophagus
11	chr6:57183000-57194200	Weak transcription	Pancreas	Pancrea
12	chr6:57183000-57194200	Weak transcription	Spleen	Spleen
13	chr6:57183000-57194400	Weak transcription	Brain Substantia Nigra	brain
14	chr6:57183000-57194600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr6:57183000-57199400	Weak transcription	HSMMtube	muscle
16	chr6:57183200-57184600	Weak transcription	Fetal Kidney	kidney
17	chr6:57183200-57184800	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr6:57183200-57185000	Weak transcription	Primary B cells from peripheral blood	blood
19	chr6:57183200-57185200	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr6:57183200-57185200	Weak transcription	Brain Anterior Caudate	brain
21	chr6:57183200-57185200	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr6:57183200-57185400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr6:57183200-57185400	Weak transcription	Fetal Brain Female	brain
24	chr6:57183200-57185400	Weak transcription	Ovary	ovary
25	chr6:57183200-57185600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr6:57183200-57185600	Weak transcription	Colon Smooth Muscle	Colon
27	chr6:57183200-57185600	Weak transcription	Thymus	Thymus
28	chr6:57183200-57186800	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr6:57183200-57187200	Weak transcription	Stomach Mucosa	stomach
30	chr6:57183200-57187400	Weak transcription	Stomach Smooth Muscle	stomach
31	chr6:57183200-57190000	Weak transcription	Fetal Intestine Small	intestine
32	chr6:57183200-57190200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr6:57183200-57190200	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr6:57183200-57191400	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr6:57183200-57191600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr6:57183200-57191800	Weak transcription	Gastric	stomach
37	chr6:57183200-57192000	Weak transcription	Fetal Brain Male	brain
38	chr6:57183200-57192600	Weak transcription	Colonic Mucosa	Colon
39	chr6:57183200-57192800	Weak transcription	Brain Angular Gyrus	brain
40	chr6:57183200-57194400	Weak transcription	Psoas Muscle	Psoas
41	chr6:57183200-57199200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr6:57183400-57184600	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr6:57183400-57184600	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr6:57183400-57184600	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr6:57183400-57184800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr6:57183400-57185000	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr6:57183400-57185000	Weak transcription	Primary monocytes fromperipheralblood	blood
48	chr6:57183400-57185400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr6:57183400-57185600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr6:57183400-57190800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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