Variant report

Variant	rs544707007
Chromosome Location	chr6:57184922-57184923
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:57184109..57185924-chr6:57191382..57194380,2	K562	blood:
2	chr6:57182240..57183797-chr6:57184315..57185904,2	MCF-7	breast:
3	chr6:57183026..57185889-chr6:57188123..57191219,3	K562	blood:
4	chr6:57182975..57187891-chr6:57191602..57197743,6	K562	blood:
5	chr6:57182878..57185696-chr6:57187760..57190457,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000146143	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533050	chr6:56504480-57297586	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	esv2758056	chr6:57184541-57562604	Weak transcription Active TSS ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	esv2759432	chr6:57184541-57562604	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:57182800-57191200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:57182800-57192600	Weak transcription	Aorta	Aorta
3	chr6:57182800-57194200	Weak transcription	Small Intestine	intestine
4	chr6:57183000-57185000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr6:57183000-57185200	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr6:57183000-57185400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr6:57183000-57185600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr6:57183000-57185600	Weak transcription	Right Ventricle	heart
9	chr6:57183000-57191400	Weak transcription	Lung	lung
10	chr6:57183000-57192600	Weak transcription	Esophagus	oesophagus
11	chr6:57183000-57194200	Weak transcription	Pancreas	Pancrea
12	chr6:57183000-57194200	Weak transcription	Spleen	Spleen
13	chr6:57183000-57194400	Weak transcription	Brain Substantia Nigra	brain
14	chr6:57183000-57194600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr6:57183000-57199400	Weak transcription	HSMMtube	muscle
16	chr6:57183200-57185000	Weak transcription	Primary B cells from peripheral blood	blood
17	chr6:57183200-57185200	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr6:57183200-57185200	Weak transcription	Brain Anterior Caudate	brain
19	chr6:57183200-57185200	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr6:57183200-57185400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr6:57183200-57185400	Weak transcription	Fetal Brain Female	brain
22	chr6:57183200-57185400	Weak transcription	Ovary	ovary
23	chr6:57183200-57185600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr6:57183200-57185600	Weak transcription	Colon Smooth Muscle	Colon
25	chr6:57183200-57185600	Weak transcription	Thymus	Thymus
26	chr6:57183200-57186800	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr6:57183200-57187200	Weak transcription	Stomach Mucosa	stomach
28	chr6:57183200-57187400	Weak transcription	Stomach Smooth Muscle	stomach
29	chr6:57183200-57190000	Weak transcription	Fetal Intestine Small	intestine
30	chr6:57183200-57190200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr6:57183200-57190200	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr6:57183200-57191400	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr6:57183200-57191600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr6:57183200-57191800	Weak transcription	Gastric	stomach
35	chr6:57183200-57192000	Weak transcription	Fetal Brain Male	brain
36	chr6:57183200-57192600	Weak transcription	Colonic Mucosa	Colon
37	chr6:57183200-57192800	Weak transcription	Brain Angular Gyrus	brain
38	chr6:57183200-57194400	Weak transcription	Psoas Muscle	Psoas
39	chr6:57183200-57199200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr6:57183400-57185000	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr6:57183400-57185000	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr6:57183400-57185400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr6:57183400-57185600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr6:57183400-57190800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr6:57183400-57190800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr6:57183400-57191400	Weak transcription	Fetal Lung	lung
47	chr6:57183600-57185200	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr6:57183600-57185200	Weak transcription	Liver	Liver
49	chr6:57183600-57185400	Transcr. at gene 5' and 3'	NHDF-Ad	bronchial
50	chr6:57183600-57191800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links