Variant report

Variant	esv2760120
Chromosome Location	chr10:25721094-25728594
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:25402163..25402736-chr10:25722736..25723649,2	MCF-7	breast:
2	chr10:25724129..25726699-chr10:25734442..25736965,2	K562	blood:
3	chr10:25727136..25729248-chr10:25744729..25747128,2	MCF-7	breast:
4	chr10:25725645..25727300-chr10:25728753..25731180,2	K562	blood:
5	chr10:25726717..25730282-chr10:25730723..25733512,4	K562	blood:

Extended variants
information (count: 160 )
Associated
traits (count: 45 )

Variant overlapped rSNPs/rCNVs (count:160 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs80333301	chr10:25724874-25724875	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs560472834	chr10:25724876-25724877	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs189098648	chr10:25724913-25724914	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs552389459	chr10:25724917-25724918	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs568969069	chr10:25724920-25724921	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs373131997	chr10:25724965-25724966	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs1341967	chr10:25724977-25724978	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs372147709	chr10:25725014-25725015	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs1341968	chr10:25725083-25725084	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs372036451	chr10:25725089-25725090	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs375398108	chr10:25725119-25725120	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs115795842	chr10:25725120-25725121	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs112839287	chr10:25725128-25725129	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs531466742	chr10:25725139-25725140	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs141741525	chr10:25725153-25725154	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs77679013	chr10:25725278-25725279	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs554678876	chr10:25725283-25725284	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs372394329	chr10:25725321-25725322	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs192630731	chr10:25725360-25725361	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs184419087	chr10:25725380-25725381	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs77199298	chr10:25725401-25725402	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs376881687	chr10:25725413-25725414	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs16925850	chr10:25725491-25725492	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs78445360	chr10:25725522-25725523	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs540278655	chr10:25725537-25725538	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs560463339	chr10:25725561-25725562	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs374074727	chr10:25725562-25725563	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs534094803	chr10:25725570-25725571	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs532409974	chr10:25725633-25725634	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs376597704	chr10:25725680-25725681	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs562677694	chr10:25725736-25725737	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs190482335	chr10:25725807-25725808	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs116126158	chr10:25725833-25725834	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs557286253	chr10:25725857-25725858	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs181936709	chr10:25725867-25725868	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs530024530	chr10:25725872-25725873	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs546545849	chr10:25725887-25725888	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs376214319	chr10:25725907-25725908	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs11014555	chr10:25725911-25725912	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs76214879	chr10:25725945-25725946	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs78045434	chr10:25726006-25726007	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs569416591	chr10:25726088-25726089	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs186086608	chr10:25726126-25726127	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs554702845	chr10:25726129-25726130	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs189235313	chr10:25726153-25726154	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs7097708	chr10:25726191-25726192	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs145401053	chr10:25726237-25726238	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs7081326	chr10:25726273-25726274	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs181207260	chr10:25726318-25726319	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs562676815	chr10:25726322-25726323	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:45)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21364760	CNVD
Behavioral abnormalities	21522184	CNVD
Dysmorphic features	21522184	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Myelofibrosis	22110671	CNVD
Autism	21439084	CNVD
Maculopathy	20981449	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Glioblastoma multiforme	21525872	CNVD
Cancer	20164919	CNVD
Ependymoma	20639864	CNVD

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25724800-25726000	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr10:25725200-25725800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr10:25725400-25725800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr10:25725800-25730200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr10:25726000-25730000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr10:25727800-25729200	Weak transcription	Psoas Muscle	Psoas
7	chr10:25728400-25731200	Active TSS	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links