Variant report

Variant	esv2760173
Chromosome Location	chr11:107229764-107239128
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:107237489..107239255-chr11:107241546..107243344,2	K562	blood:

Extended variants
information (count: 377 )
Associated
traits (count: 94 )

Variant overlapped rSNPs/rCNVs (count:377 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs72394575	chr11:107229782-107229783	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs67723417	chr11:107229783-107229784	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs561790388	chr11:107229810-107229811	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs537175236	chr11:107229816-107229817	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs558661022	chr11:107229825-107229826	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs371901247	chr11:107229826-107229827	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs541230184	chr11:107229859-107229860	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs187826312	chr11:107229874-107229875	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs368758532	chr11:107229886-107229887	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs147834600	chr11:107229887-107229888	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs117782399	chr11:107229923-107229924	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs113701346	chr11:107229952-107229953	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs563385750	chr11:107229953-107229954	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs376790209	chr11:107229954-107229955	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs530799102	chr11:107229971-107229972	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs545922209	chr11:107230001-107230002	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs532433619	chr11:107230057-107230058	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs200118753	chr11:107230071-107230072	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs532352849	chr11:107230072-107230073	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs565647526	chr11:107230091-107230092	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs547227609	chr11:107230139-107230140	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs565861509	chr11:107230140-107230141	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs528237697	chr11:107230156-107230157	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs529981244	chr11:107230164-107230165	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs548449126	chr11:107230176-107230177	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs569696899	chr11:107230214-107230215	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs548005315	chr11:107230228-107230229	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs558699828	chr11:107230256-107230257	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs570524055	chr11:107230257-107230258	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs373097615	chr11:107230262-107230263	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs139722083	chr11:107230277-107230278	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs72990457	chr11:107230279-107230280	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs536383485	chr11:107230313-107230314	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs542196386	chr11:107230314-107230315	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs557211971	chr11:107230317-107230318	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs575259805	chr11:107230321-107230322	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs545760128	chr11:107230339-107230340	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs564242091	chr11:107230340-107230341	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs375175731	chr11:107230379-107230380	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs528623630	chr11:107230397-107230398	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs540709694	chr11:107230401-107230402	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs559315129	chr11:107230448-107230449	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs193289258	chr11:107230480-107230481	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs149957929	chr11:107230535-107230536	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs78939708	chr11:107230536-107230537	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs61190499	chr11:107230543-107230544	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs375672422	chr11:107230548-107230549	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs58976500	chr11:107230570-107230571	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs570425989	chr11:107230672-107230673	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs570001304	chr11:107230678-107230679	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:94)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Acute myeloid leukemia	20729466	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Cervical cancer	21062161	CNVD
Esophageal squamous carcinoma	18350619	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	22429812	CNVD
Breast cancer	16608533	CNVD
T-cell lymphomas	19863542	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Basal cell lymphoma	17053054	CNVD
Hepatocellular carcinoma	16785998	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21785460	CNVD
Breast cancer	21958427	CNVD
Lung cancer	18438408	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	17133270	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	17603634	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Basal cell lymphoma	16790693	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Breast cancer	21364760	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Mental retardation	19966786	CNVD
Non-small cell lung cancer	21829676	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Intracranial aneurysm	16715129	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Urothelial carcinoma	21177765	CNVD
Myelofibrosis	22110671	CNVD
Ovarian cancer	21720365	CNVD
Chronic lymphocytic leukemia	17805327	CNVD
Glioblastoma multiforme	22286061	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Neuroblastoma	17327916	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Mantle cell lymphoma	19029149	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Malignant melanoma	17260012	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Prostate cancer	16573809	CNVD
Prostate cancer	18632612	CNVD
Obesity	19966786	CNVD
Renal cell carcinoma	21668985	CNVD
Cancer	20164920	CNVD
Cancer	20164919	CNVD
Pancreatic cancer	17952125	CNVD
Melanoma	20877625	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107169400-107230000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr11:107173600-107231400	Weak transcription	Brain Angular Gyrus	brain
3	chr11:107179200-107229800	Weak transcription	Psoas Muscle	Psoas
4	chr11:107180000-107233200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr11:107183400-107234400	Weak transcription	HSMMtube	muscle
6	chr11:107192200-107232200	Weak transcription	Esophagus	oesophagus
7	chr11:107193800-107229800	Weak transcription	Right Ventricle	heart
8	chr11:107193800-107237200	Weak transcription	Gastric	stomach
9	chr11:107194600-107235600	Weak transcription	Aorta	Aorta
10	chr11:107195000-107299200	Weak transcription	Colon Smooth Muscle	Colon
11	chr11:107195200-107233000	Weak transcription	Fetal Muscle Trunk	muscle
12	chr11:107198200-107233200	Weak transcription	Placenta	Placenta
13	chr11:107198200-107240800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr11:107205600-107234800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr11:107214200-107232600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr11:107215400-107231200	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr11:107215800-107230000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr11:107215800-107230600	Weak transcription	Fetal Muscle Leg	muscle
19	chr11:107215800-107231600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr11:107215800-107233000	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr11:107215800-107240800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr11:107217400-107229800	Weak transcription	Lung	lung
23	chr11:107219800-107232600	Weak transcription	Duodenum Mucosa	Duodenum
24	chr11:107219800-107234800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr11:107219800-107256400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr11:107220000-107234000	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr11:107220600-107232000	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr11:107221200-107231400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:107221800-107229800	Weak transcription	Fetal Kidney	kidney
30	chr11:107221800-107230000	Weak transcription	Fetal Lung	lung
31	chr11:107221800-107231200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr11:107221800-107232600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr11:107221800-107232800	Weak transcription	Left Ventricle	heart
34	chr11:107221800-107258400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr11:107222000-107240200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr11:107222200-107231200	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr11:107222600-107232600	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr11:107223000-107253000	Weak transcription	Liver	Liver
39	chr11:107223000-107253600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr11:107223000-107256400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr11:107223000-107260600	Weak transcription	Brain Anterior Caudate	brain
42	chr11:107223000-107260600	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr11:107223200-107229800	Weak transcription	Primary T cells from cord blood	blood
44	chr11:107223200-107229800	Weak transcription	Ovary	ovary
45	chr11:107223200-107234200	Weak transcription	Rectal Smooth Muscle	rectum
46	chr11:107223200-107234800	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr11:107223600-107232200	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr11:107223800-107234400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr11:107224000-107258400	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr11:107224200-107230600	Weak transcription	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links