Variant report

Variant	rs561790388
Chromosome Location	chr11:107229810-107229811
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898364	chr11:106944975-107285636	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv898365	chr11:106944975-107430300	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv898366	chr11:106944975-107433835	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv898367	chr11:106944975-107443420	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv898369	chr11:106958304-107443420	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv898370	chr11:107027991-107430300	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv898372	chr11:107049968-107433835	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1038368	chr11:107116577-107664181	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
9	nsv541163	chr11:107116577-107664181	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
10	nsv898373	chr11:107124903-107433835	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv832261	chr11:107145901-107321562	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv898374	chr11:107156880-107263130	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv556280	chr11:107158740-107231605	Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	esv2756363	chr11:107189790-107376790	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
15	nsv556281	chr11:107197869-107240802	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv475	chr11:107211800-107255722	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	nsv556282	chr11:107218404-107243206	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	nsv75	chr11:107219624-107251780	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	nsv508655	chr11:107222641-107257485	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	nsv556283	chr11:107222904-107240250	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
21	esv1821763	chr11:107222904-107243427	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
22	esv1810653	chr11:107222904-107250851	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
23	nsv1035610	chr11:107223758-107239116	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
24	nsv8872	chr11:107228364-107249620	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
25	nsv975128	chr11:107228453-107242486	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
26	nsv971960	chr11:107228453-107250916	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
27	esv2760173	chr11:107229764-107239128	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107169400-107230000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr11:107173600-107231400	Weak transcription	Brain Angular Gyrus	brain
3	chr11:107180000-107233200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr11:107183400-107234400	Weak transcription	HSMMtube	muscle
5	chr11:107192200-107232200	Weak transcription	Esophagus	oesophagus
6	chr11:107193800-107237200	Weak transcription	Gastric	stomach
7	chr11:107194600-107235600	Weak transcription	Aorta	Aorta
8	chr11:107195000-107299200	Weak transcription	Colon Smooth Muscle	Colon
9	chr11:107195200-107233000	Weak transcription	Fetal Muscle Trunk	muscle
10	chr11:107198200-107233200	Weak transcription	Placenta	Placenta
11	chr11:107198200-107240800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr11:107205600-107234800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr11:107214200-107232600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr11:107215400-107231200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr11:107215800-107230000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr11:107215800-107230600	Weak transcription	Fetal Muscle Leg	muscle
17	chr11:107215800-107231600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:107215800-107233000	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr11:107215800-107240800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr11:107219800-107232600	Weak transcription	Duodenum Mucosa	Duodenum
21	chr11:107219800-107234800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr11:107219800-107256400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr11:107220000-107234000	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr11:107220600-107232000	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr11:107221200-107231400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:107221800-107230000	Weak transcription	Fetal Lung	lung
27	chr11:107221800-107231200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr11:107221800-107232600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr11:107221800-107232800	Weak transcription	Left Ventricle	heart
30	chr11:107221800-107258400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr11:107222000-107240200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr11:107222200-107231200	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr11:107222600-107232600	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr11:107223000-107253000	Weak transcription	Liver	Liver
35	chr11:107223000-107253600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr11:107223000-107256400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr11:107223000-107260600	Weak transcription	Brain Anterior Caudate	brain
38	chr11:107223000-107260600	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr11:107223200-107234200	Weak transcription	Rectal Smooth Muscle	rectum
40	chr11:107223200-107234800	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr11:107223600-107232200	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr11:107223800-107234400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr11:107224000-107258400	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr11:107224200-107230600	Weak transcription	Primary hematopoietic stem cells	blood
45	chr11:107224400-107233600	Weak transcription	Dnd41	blood
46	chr11:107224600-107249600	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr11:107224600-107253400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr11:107225600-107231400	Weak transcription	Primary B cells from peripheral blood	blood
49	chr11:107225800-107250000	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr11:107225800-107256400	Weak transcription	Adipose Nuclei	Adipose

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