Variant report

Variant	esv2761597
Chromosome Location	chr10:55284004-55290175
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:55271750..55273969-chr10:55282270..55285131,2	MCF-7	breast:

Extended variants
information (count: 223 )
Associated
traits (count: 71 )

Variant overlapped rSNPs/rCNVs (count:223 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs7070911	chr10:55284004-55284005	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs73237600	chr10:55284050-55284051	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs554852690	chr10:55284062-55284063	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs7074549	chr10:55284063-55284064	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs539897094	chr10:55284095-55284096	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs116137668	chr10:55284096-55284097	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs149885420	chr10:55284105-55284106	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs576600732	chr10:55284125-55284126	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs577927396	chr10:55284137-55284138	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs115244829	chr10:55284165-55284166	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs562624025	chr10:55284186-55284187	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs7071194	chr10:55284208-55284209	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs7086598	chr10:55284219-55284220	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs201952699	chr10:55284244-55284245	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs530082342	chr10:55284246-55284247	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs546712226	chr10:55284304-55284305	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs560550530	chr10:55284322-55284323	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs532472746	chr10:55284345-55284346	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs376756066	chr10:55284394-55284395	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs7086889	chr10:55284408-55284409	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs371304413	chr10:55284441-55284442	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs538091225	chr10:55284456-55284457	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs548472064	chr10:55284483-55284484	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs568690613	chr10:55284489-55284490	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs10762989	chr10:55284512-55284513	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs576344898	chr10:55284525-55284526	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs553457531	chr10:55284598-55284599	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs10825054	chr10:55284745-55284746	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs546152502	chr10:55284761-55284762	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs556332838	chr10:55284786-55284787	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs575223409	chr10:55284809-55284810	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs576299366	chr10:55284818-55284819	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs542072802	chr10:55284825-55284826	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs575826152	chr10:55284837-55284838	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs561948005	chr10:55284845-55284846	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs544793855	chr10:55284955-55284956	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs12775262	chr10:55284982-55284983	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs12775271	chr10:55284990-55284991	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs541340951	chr10:55285014-55285015	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs182583591	chr10:55285025-55285026	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs150336043	chr10:55285037-55285038	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs146420874	chr10:55285124-55285125	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs532735101	chr10:55285137-55285138	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs140917400	chr10:55285162-55285163	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs187285277	chr10:55285167-55285168	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs531768771	chr10:55285183-55285184	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs548411324	chr10:55285221-55285222	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs568655822	chr10:55285247-55285248	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs559793117	chr10:55285298-55285299	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs143224605	chr10:55285299-55285300	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:71)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Obesity	21956041	CNVD
Developmental delay	21948486	CNVD
Dysmorphic features	21948486	CNVD
Epilepsy	21948486	CNVD
Intellectual disability	21948486	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16272173	CNVD
Metanephric adenoma	20802469	CNVD
Autism	20841430	CNVD
Mental retardation	17124404	CNVD
Epilepsy	20923578	CNVD
Prostate cancer	16573809	CNVD
Schizophrenia	19329560	CNVD
Heart failure	18772530	CNVD
Heart failure	18854381	CNVD
Hyperglycemia	19060297	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Glioblastoma multiforme	22286061	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Usher syndrome	20538994	CNVD
Glioblastoma multiforme	17002787	CNVD
Colorectal cancer	16774939	CNVD
Autism	20858243	CNVD
Melanoma	17363583	CNVD
Breast cancer	22522925	CNVD
Usher type I cohort	17277737	CNVD
Usher type I cohort	21436283	CNVD
Leukemia	21357790	CNVD
Medulloblastoma	22832581	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55278600-55288600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr10:55284000-55288800	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr10:55288600-55289000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr10:55288600-55289400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr10:55288600-55290600	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr10:55288800-55289000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:55288800-55289200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr10:55288800-55289400	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr10:55289000-55290200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr10:55289000-55315600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:55289400-55290400	Weak transcription	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links