Variant report

Variant	rs10825054
Chromosome Location	chr10:55284745-55284746
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:55271750..55273969-chr10:55282270..55285131,2	MCF-7	breast:

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10508996	0.87[ASN][1000 genomes]
rs10762989	0.96[ASN][1000 genomes]
rs10762990	0.95[ASN][1000 genomes]
rs10762992	0.93[ASN][1000 genomes]
rs10825036	0.83[ASN][1000 genomes]
rs10825037	0.87[ASN][1000 genomes]
rs10825039	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10825040	0.91[ASN][1000 genomes]
rs10825044	0.89[ASN][1000 genomes]
rs10825045	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10825046	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10825048	0.88[ASN][1000 genomes]
rs10825049	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10825050	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10825051	0.91[ASN][1000 genomes]
rs10825056	0.92[ASN][1000 genomes]
rs10825057	0.96[ASN][1000 genomes]
rs10825058	0.97[ASN][1000 genomes]
rs10825059	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10825060	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10825061	0.94[ASN][1000 genomes]
rs10825062	0.96[ASN][1000 genomes]
rs11003648	0.81[ASN][1000 genomes]
rs11003649	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11003652	0.82[ASN][1000 genomes]
rs11003660	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11003662	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11003663	0.96[ASN][1000 genomes]
rs11003667	0.97[ASN][1000 genomes]
rs11003673	0.90[ASN][1000 genomes]
rs11527263	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11527471	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1157254	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12355148	0.84[ASN][1000 genomes]
rs12355167	0.84[ASN][1000 genomes]
rs12358302	0.83[ASN][1000 genomes]
rs12772765	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1814085	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28841706	0.84[ASN][1000 genomes]
rs34965206	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs351821	0.85[ASN][1000 genomes]
rs365441	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs367119	0.91[ASN][1000 genomes]
rs367719	0.89[ASN][1000 genomes]
rs369462	0.89[ASN][1000 genomes]
rs369979	0.90[ASN][1000 genomes]
rs371048	0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs372884	0.94[ASN][1000 genomes]
rs373544	0.94[ASN][1000 genomes]
rs374406	0.86[ASN][1000 genomes]
rs374873	0.90[ASN][1000 genomes]
rs377467	0.94[ASN][1000 genomes]
rs379770	0.91[ASN][1000 genomes]
rs379828	0.90[ASN][1000 genomes]
rs380479	0.90[ASN][1000 genomes]
rs381474	0.89[ASN][1000 genomes]
rs383932	0.89[ASN][1000 genomes]
rs387908	0.87[ASN][1000 genomes]
rs390597	0.94[ASN][1000 genomes]
rs399626	0.91[ASN][1000 genomes]
rs402461	0.91[ASN][1000 genomes]
rs403436	0.91[ASN][1000 genomes]
rs405136	0.85[ASN][1000 genomes]
rs405138	0.85[ASN][1000 genomes]
rs407008	0.94[ASN][1000 genomes]
rs408049	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs414705	0.91[ASN][1000 genomes]
rs414874	0.91[ASN][1000 genomes]
rs416975	0.96[ASN][1000 genomes]
rs417046	0.94[ASN][1000 genomes]
rs419882	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs421811	0.93[ASN][1000 genomes]
rs422296	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs426610	0.94[ASN][1000 genomes]
rs428019	0.94[ASN][1000 genomes]
rs429497	0.80[EUR][1000 genomes]
rs445739	0.94[ASN][1000 genomes]
rs447188	0.81[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs447399	0.92[ASN][1000 genomes]
rs452199	0.80[EUR][1000 genomes]
rs452339	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs595633	0.91[ASN][1000 genomes]
rs612779	0.84[ASN][1000 genomes]
rs612813	0.87[ASN][1000 genomes]
rs61859858	0.83[EUR][1000 genomes]
rs61862612	0.91[ASN][1000 genomes]
rs7072272	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7072928	0.89[ASN][1000 genomes]
rs7080156	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7083928	0.91[ASN][1000 genomes]
rs7084959	0.91[ASN][1000 genomes]
rs7097071	0.91[ASN][1000 genomes]
rs7097292	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7098611	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7903691	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs996212	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752952	chr10:54900994-55497594	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1037480	chr10:55102814-55289571	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1048399	chr10:55151470-55313737	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1044282	chr10:55186501-55516392	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv540631	chr10:55186501-55516392	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1043501	chr10:55186701-55516253	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv540632	chr10:55186701-55516253	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1050323	chr10:55190079-55546575	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv3390330	chr10:55281995-55298396	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv2761597	chr10:55284004-55290175	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55278600-55288600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr10:55284000-55288800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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