Variant report

Variant	rs381474
Chromosome Location	chr10:55304647-55304648
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:55303514..55305516-chr10:55305569..55307810,2	K562	blood:
2	chr10:55298474..55301304-chr10:55304357..55306392,2	MCF-7	breast:

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10762989	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10762990	0.92[ASN][1000 genomes]
rs10762992	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10762993	0.81[EUR][1000 genomes]
rs10825039	0.82[ASN][1000 genomes]
rs10825040	0.83[ASN][1000 genomes]
rs10825044	0.82[ASN][1000 genomes]
rs10825045	0.82[ASN][1000 genomes]
rs10825046	0.82[ASN][1000 genomes]
rs10825048	0.86[ASN][1000 genomes]
rs10825049	0.85[ASN][1000 genomes]
rs10825050	0.85[ASN][1000 genomes]
rs10825051	0.83[ASN][1000 genomes]
rs10825054	0.89[ASN][1000 genomes]
rs10825056	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10825057	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10825058	0.89[ASN][1000 genomes]
rs10825059	0.92[ASN][1000 genomes]
rs10825060	0.92[ASN][1000 genomes]
rs10825061	0.91[ASN][1000 genomes]
rs10825062	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11003660	0.82[ASN][1000 genomes]
rs11003662	0.85[ASN][1000 genomes]
rs11003663	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11003667	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11003673	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1157254	0.82[ASN][1000 genomes]
rs1814085	0.82[ASN][1000 genomes]
rs2384263	0.85[EUR][1000 genomes]
rs34965206	0.82[ASN][1000 genomes]
rs365441	0.97[ASN][1000 genomes]
rs367119	0.91[ASN][1000 genomes]
rs367719	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs369462	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs369979	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs371048	0.87[ASN][1000 genomes]
rs372884	0.88[ASN][1000 genomes]
rs373544	0.88[ASN][1000 genomes]
rs374406	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs374873	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs377467	0.88[ASN][1000 genomes]
rs379770	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs379828	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs380479	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs382284	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs382559	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs383932	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs387908	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs390597	0.88[ASN][1000 genomes]
rs399626	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs402461	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs403436	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs405136	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs405138	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs407008	0.88[ASN][1000 genomes]
rs408049	0.90[ASN][1000 genomes]
rs414705	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs414874	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs416975	0.90[ASN][1000 genomes]
rs417046	0.88[ASN][1000 genomes]
rs421811	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs422296	0.90[ASN][1000 genomes]
rs426610	0.88[ASN][1000 genomes]
rs428019	0.88[ASN][1000 genomes]
rs445739	0.88[ASN][1000 genomes]
rs447188	0.87[ASN][1000 genomes]
rs447399	0.90[ASN][1000 genomes]
rs452339	0.90[ASN][1000 genomes]
rs595633	0.90[ASN][1000 genomes]
rs612779	0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs612813	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61862612	0.83[ASN][1000 genomes]
rs7072272	0.82[ASN][1000 genomes]
rs7072928	0.82[ASN][1000 genomes]
rs7080156	0.81[ASN][1000 genomes]
rs7083928	0.83[ASN][1000 genomes]
rs7084959	0.83[ASN][1000 genomes]
rs7097071	0.83[ASN][1000 genomes]
rs7097292	0.81[ASN][1000 genomes]
rs7098611	0.83[ASN][1000 genomes]
rs7903691	0.85[ASN][1000 genomes]
rs996212	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752952	chr10:54900994-55497594	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1048399	chr10:55151470-55313737	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1044282	chr10:55186501-55516392	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv540631	chr10:55186501-55516392	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1043501	chr10:55186701-55516253	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv540632	chr10:55186701-55516253	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1050323	chr10:55190079-55546575	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55289000-55315600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:55304400-55304800	Active TSS	Gastric	stomach
3	chr10:55304600-55305200	Enhancers	HUVEC	blood vessel

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