Variant report

Variant	esv32560
Chromosome Location	chr16:75465765-75471455
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:721)
CpG islands
(count:976)
Chromatin interactive
region (count:27)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:721 , 50 per page) page: 1 2 3 4 5 6 7 ... 15

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr16:75466900-75466988	K562	blood:	n/a	n/a
2	ARID3A	chr16:75467506-75468258	K562	blood:	n/a	chr16:75467544-75467560
3	ARID3A	chr16:75467182-75468219	HepG2	liver:	n/a	chr16:75467544-75467560
4	ARID3A	chr16:75468643-75468781	HepG2	liver:	n/a	n/a
5	ATF1	chr16:75467242-75468302	K562	blood:	n/a	n/a
6	ATF2	chr16:75467072-75468122	GM12878	blood:	n/a	n/a
7	ATF2	chr16:75466904-75468225	H1-hESC	embryonic stem cell:	n/a	n/a
8	ATF2	chr16:75466811-75467682	H1-hESC	embryonic stem cell:	n/a	n/a
9	ATF2	chr16:75467692-75468245	H1-hESC	embryonic stem cell:	n/a	n/a
10	ATF2	chr16:75467114-75468241	GM12878	blood:	n/a	n/a
11	ATF3	chr16:75466847-75467236	K562	blood:	n/a	chr16:75467130-75467139
12	ATF3	chr16:75467519-75468101	A549	lung:	n/a	n/a
13	ATF3	chr16:75467024-75467484	A549	lung:	n/a	chr16:75467130-75467139 chr16:75467472-75467480
14	BCL3	chr16:75466687-75468032	A549	lung:	n/a	chr16:75467334-75467347 chr16:75467512-75467525 chr16:75466959-75466968 chr16:75466961-75466974 chr16:75467417-75467426 chr16:75466964-75466977 chr16:75467109-75467122 chr16:75467338-75467351
15	BCLAF1	chr16:75466828-75468075	GM12878	blood:	n/a	chr16:75467334-75467347 chr16:75467512-75467525 chr16:75466959-75466968 chr16:75466961-75466974 chr16:75467417-75467426 chr16:75466964-75466977 chr16:75467109-75467122 chr16:75467338-75467351
16	BHLHE40	chr16:75466929-75467690	A549	lung:	n/a	chr16:75467128-75467141 chr16:75466961-75466977 chr16:75467016-75467032
17	BHLHE40	chr16:75466861-75467325	HepG2	liver:	n/a	chr16:75467128-75467141 chr16:75466961-75466977 chr16:75467016-75467032
18	BHLHE40	chr16:75468645-75468698	K562	blood:	n/a	n/a
19	BHLHE40	chr16:75466691-75468339	K562	blood:	n/a	chr16:75467128-75467141 chr16:75466961-75466977 chr16:75467016-75467032
20	BHLHE40	chr16:75466620-75468341	GM12878	blood:	n/a	chr16:75467128-75467141 chr16:75466961-75466977 chr16:75467016-75467032
21	BHLHE40	chr16:75466689-75468298	HepG2	liver:	n/a	chr16:75467128-75467141 chr16:75466961-75466977 chr16:75467016-75467032
22	BRCA1	chr16:75466882-75468256	HepG2	liver:	n/a	n/a
23	BRCA1	chr16:75467040-75467762	GM12878	blood:	n/a	n/a
24	BRCA1	chr16:75467128-75467901	Hela-S3	cervix:	n/a	n/a
25	CBX3	chr16:75466783-75467090	K562	blood:	n/a	n/a
26	CBX3	chr16:75466445-75468437	K562	blood:	n/a	n/a
27	CCNT2	chr16:75466727-75467575	K562	blood:	n/a	n/a
28	CEBPB	chr16:75468780-75469015	HepG2	liver:	n/a	n/a
29	CEBPB	chr16:75468515-75469004	MCF-7	breast:	n/a	n/a
30	CEBPB	chr16:75468743-75468870	HepG2	liver:	n/a	n/a
31	CEBPB	chr16:75468792-75468982	H1-hESC	embryonic stem cell:	n/a	n/a
32	CEBPB	chr16:75468643-75469017	K562	blood:	n/a	n/a
33	CEBPB	chr16:75468704-75469014	A549	lung:	n/a	n/a
34	CEBPB	chr16:75467345-75467459	K562	blood:	n/a	n/a
35	CEBPB	chr16:75467678-75468394	GM12878	blood:	n/a	n/a
36	CEBPB	chr16:75468325-75468951	K562	blood:	n/a	n/a
37	CEBPB	chr16:75467045-75467242	HepG2	liver:	n/a	n/a
38	CEBPD	chr16:75466840-75467479	HepG2	liver:	n/a	n/a
39	CHD1	chr16:75466560-75466780	GM12878	blood:	n/a	n/a
40	CHD1	chr16:75467613-75468068	GM12878	blood:	n/a	n/a
41	CHD1	chr16:75467536-75468426	H1-hESC	embryonic stem cell:	n/a	n/a
42	CHD1	chr16:75467013-75467312	GM12878	blood:	n/a	n/a
43	CHD2	chr16:75466779-75468325	H1-hESC	embryonic stem cell:	n/a	n/a
44	CHD2	chr16:75466814-75468111	GM12878	blood:	n/a	n/a
45	CHD2	chr16:75466734-75468122	HepG2	liver:	n/a	n/a
46	CHD2	chr16:75466937-75468089	Hela-S3	cervix:	n/a	n/a
47	CHD2	chr16:75467761-75468346	K562	blood:	n/a	n/a
48	CHD2	chr16:75466903-75467351	K562	blood:	n/a	n/a
49	CREB1	chr16:75466676-75467705	K562	blood:	n/a	n/a
50	CREB1	chr16:75466715-75468247	GM12878	blood:	n/a	n/a

(count:976 , 50 per page) page: 1 2 3 4 5 6 7 ... 20

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr16:75467215-75467265	AG09309	skin:	n/a
2	chr16:75469775-75469825	BE2_C	brain:	n/a
3	chr16:75466707-75466757	HEEpiC	esophagus:	n/a
4	chr16:75468318-75468368	GM06990	blood:	n/a
5	chr16:75469775-75469825	AG09319	gingival:	n/a
6	chr16:75467935-75467985	T-47D	breast:	n/a
7	chr16:75467423-75467473	HRCEpiC	kidney:	n/a
8	chr16:75466707-75466757	GM12878	blood:	n/a
9	chr16:75468057-75468107	NHDF-neo	bronchial:	n/a
10	chr16:75467935-75467985	HCPEpiC	choroid plexus:	n/a
11	chr16:75467935-75467985	HRPEpiC	eye:	n/a
12	chr16:75469775-75469825	HPAEpiC	pulmonary alveolar:	n/a
13	chr16:75466851-75466901	NHDF-neo	bronchial:	n/a
14	chr16:75466707-75466757	AG04449	skin:	fetal
15	chr16:75467946-75467996	HEK293	kidney:	embryo
16	chr16:75468281-75468331	HL-60	blood:	n/a
17	chr16:75466707-75466757	BJ	skin:	n/a
18	chr16:75467877-75467927	AG09309	skin:	n/a
19	chr16:75468281-75468331	HRE	kidney:	n/a
20	chr16:75466851-75466901	AG09309	skin:	n/a
21	chr16:75468057-75468107	U87	brain:	n/a
22	chr16:75468318-75468368	SK-N-SH_RA	brain:	n/a
23	chr16:75467946-75467996	HCM	heart:	n/a
24	chr16:75467423-75467473	PANC-1	pancreas:	n/a
25	chr16:75467486-75467536	HMEC	breast:	n/a
26	chr16:75467946-75467996	NB4	blood:	n/a
27	chr16:75469775-75469825	A549	lung:	n/a
28	chr16:75467935-75467985	HIPEpiC	eye:	n/a
29	chr16:75467772-75467822	IMR90	lung:	fetal
30	chr16:75467486-75467536	HEEpiC	esophagus:	n/a
31	chr16:75468057-75468107	Jurkat	blood:	n/a
32	chr16:75468057-75468107	BE2_C	brain:	n/a
33	chr16:75468297-75468347	AG09309	skin:	n/a
34	chr16:75467692-75467742	H1-hESC	embryonic stem cell:	embryo
35	chr16:75468281-75468331	A549	lung:	n/a
36	chr16:75467692-75467742	LNCaP	prostate:	n/a
37	chr16:75467877-75467927	H1-hESC	embryonic stem cell:	embryo
38	chr16:75468318-75468368	HRE	kidney:	n/a
39	chr16:75469775-75469825	HEK293	kidney:	embryo
40	chr16:75466707-75466757	GM19239	blood:	n/a
41	chr16:75469775-75469825	GM12892	blood:	n/a
42	chr16:75467877-75467927	Jurkat	blood:	n/a
43	chr16:75467423-75467473	HPAEpiC	pulmonary alveolar:	n/a
44	chr16:75467215-75467265	HNPCEpiC	eye:	n/a
45	chr16:75467423-75467473	AG10803	skin:	n/a
46	chr16:75467935-75467985	HMEC	breast:	n/a
47	chr16:75466851-75466901	GM06990	blood:	n/a
48	chr16:75467374-75467424	RPTEC	kidney:	n/a
49	chr16:75467772-75467822	SK-N-MC	brain:	n/a
50	chr16:75467215-75467265	AG09319	gingival:	n/a

(count:27 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:66967901..66968593-chr16:75466894..75467429,2	Hela-S3	cervix:
2	chr16:75465449..75469390-chr16:75587663..75590801,6	K562	blood:
3	chr16:75284019..75287279-chr16:75466611..75469457,3	MCF-7	breast:
4	chr16:75464062..75469543-chr16:75495268..75500189,14	MCF-7	breast:
5	chr16:75465991..75469604-chr16:75494524..75499996,12	MCF-7	breast:
6	chr16:75465910..75469192-chr16:75654368..75658890,6	K562	blood:
7	chr16:75279924..75282284-chr16:75466090..75468408,2	K562	blood:
8	chr16:75469726..75471797-chr16:75681712..75684278,2	MCF-7	breast:
9	chr16:75466586..75469509-chr16:75679295..75683235,4	K562	blood:
10	chr16:75466031..75468931-chr16:75549812..75551653,2	K562	blood:
11	chr16:75467998..75470976-chr16:75484514..75486577,2	MCF-7	breast:
12	chr16:75465932..75469067-chr16:75469357..75472115,3	MCF-7	breast:
13	chr16:75284907..75286555-chr16:75465225..75468013,2	MCF-7	breast:
14	chr16:75288674..75290841-chr16:75469410..75471431,2	K562	blood:
15	chr16:75440851..75444308-chr16:75465493..75468084,3	MCF-7	breast:
16	chr16:75468270..75471341-chr16:75474045..75476469,3	K562	blood:
17	chr16:75284336..75286423-chr16:75467172..75469281,2	K562	blood:
18	chr16:75467294..75467997-chr16:75498539..75499091,2	MCF-7	breast:
19	chr16:75465566..75468619-chr16:75548282..75552307,4	MCF-7	breast:
20	chr1:147806696..147807392-chr16:75467009..75467821,2	Hela-S3	cervix:
21	chr16:75467207..75468752-chr16:75656825..75658775,2	MCF-7	breast:
22	chr16:75467452..75469743-chr16:75480979..75483108,3	K562	blood:
23	chr16:75466173..75469509-chr16:75680461..75683235,3	K562	blood:
24	chr16:75466075..75467662-chr16:75587828..75590094,2	MCF-7	breast:
25	chr16:75466440..75468341-chr16:75498328..75499164,5	MCF-7	breast:
26	chr16:75466841..75469026-chr16:75598696..75600730,2	MCF-7	breast:
27	chr16:75467060..75468632-chr16:75654952..75657400,2	K562	blood:

No data

Variant related genes	Relation type
CFDP1	TF binding region
CFDP1	CpG island
ENSG00000034713	chromatin interactions
ENSG00000166822	chromatin interactions
ENSG00000050820	chromatin interactions
ENSG00000205084	chromatin interactions
ENSG00000166848	chromatin interactions
ENSG00000261717	chromatin interactions
ENSG00000262583	chromatin interactions
ENSG00000153774	chromatin interactions
ENSG00000172831	chromatin interactions
ENSG00000166595	chromatin interactions
ENSG00000065457	chromatin interactions
ENSG00000252122	chromatin interactions
ENSG00000202408	chromatin interactions
ENSG00000065427	chromatin interactions

Extended variants
information (count: 288 )
Associated
traits (count: 68 )

Variant overlapped rSNPs/rCNVs (count:288 , 50 per page) page: 1 2 3 4 5 6

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs562672010	chr16:75465780-75465781	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
2	rs576159069	chr16:75465784-75465785	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
3	rs34116220	chr16:75465789-75465790	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
4	rs397855092	chr16:75465792-75465793	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
5	rs71380741	chr16:75465809-75465810	Weak transcription Enhancers Strong transcription Active TSS	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
6	rs575466889	chr16:75465810-75465811	Weak transcription Enhancers Strong transcription Active TSS	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
7	rs77129648	chr16:75465826-75465827	Weak transcription Enhancers Strong transcription Active TSS	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
8	rs35300588	chr16:75465827-75465828	Weak transcription Enhancers Strong transcription Active TSS	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
9	rs74661681	chr16:75465828-75465829	Weak transcription Enhancers Strong transcription Active TSS	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
10	rs542064139	chr16:75465873-75465874	Weak transcription Enhancers Strong transcription Active TSS	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
11	rs561822170	chr16:75465878-75465879	Weak transcription Enhancers Strong transcription Active TSS	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
12	rs527630801	chr16:75465904-75465905	Weak transcription Enhancers Strong transcription Active TSS	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
13	rs544401823	chr16:75465945-75465946	Weak transcription Enhancers Strong transcription Active TSS	Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
14	rs147629410	chr16:75465954-75465955	Weak transcription Enhancers Strong transcription Active TSS	Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
15	rs533023622	chr16:75465957-75465958	Weak transcription Enhancers Strong transcription Active TSS	Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
16	rs549906558	chr16:75465972-75465973	Weak transcription Enhancers Strong transcription Active TSS	Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
17	rs570193050	chr16:75466006-75466007	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
18	rs529456536	chr16:75466009-75466010	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
19	rs375226196	chr16:75466074-75466075	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
20	rs541353927	chr16:75466087-75466088	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
21	rs549601319	chr16:75466100-75466101	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
22	rs368452272	chr16:75466106-75466107	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
23	rs566223154	chr16:75466114-75466115	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
24	rs535022074	chr16:75466127-75466128	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
25	rs557698143	chr16:75466128-75466129	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
26	rs72787169	chr16:75466146-75466147	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	7 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs113622883	chr16:75466154-75466155	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
28	rs111624020	chr16:75466155-75466156	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
29	rs557181924	chr16:75466167-75466168	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
30	rs187326210	chr16:75466226-75466227	Weak transcription Active TSS Enhancers Flanking Active TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
31	rs541655478	chr16:75466235-75466236	Weak transcription Active TSS Enhancers Flanking Active TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
32	rs555564823	chr16:75466239-75466240	Weak transcription Active TSS Enhancers Flanking Active TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
33	rs142314949	chr16:75466243-75466244	Weak transcription Active TSS Enhancers Flanking Active TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
34	rs374531754	chr16:75466269-75466270	Weak transcription Active TSS Enhancers Flanking Active TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
35	rs55961935	chr16:75466291-75466292	Weak transcription Active TSS Enhancers Flanking Active TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
36	rs529258285	chr16:75466308-75466309	Weak transcription Active TSS Enhancers Flanking Active TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
37	rs139011732	chr16:75466322-75466323	Weak transcription Active TSS Enhancers Flanking Active TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
38	rs71134715	chr16:75466324-75466325	Weak transcription Active TSS Enhancers Flanking Active TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
39	rs145928679	chr16:75466354-75466355	Weak transcription Active TSS Enhancers Flanking Active TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
40	rs138608681	chr16:75466357-75466358	Weak transcription Active TSS Enhancers Flanking Active TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
41	rs149371336	chr16:75466362-75466363	Weak transcription Active TSS Enhancers Flanking Active TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
42	rs557907798	chr16:75466365-75466366	Weak transcription Active TSS Enhancers Flanking Active TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
43	rs11639783	chr16:75466374-75466375	Weak transcription Active TSS Enhancers Flanking Active TSS	Chromatin interactive region	9 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
44	rs529015564	chr16:75466405-75466406	Active TSS Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
45	rs11644741	chr16:75466433-75466434	Active TSS Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	9 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
46	rs566279616	chr16:75466470-75466471	Active TSS Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
47	rs192147618	chr16:75466482-75466483	Active TSS Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
48	rs551659641	chr16:75466491-75466492	Active TSS Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
49	rs74879517	chr16:75466501-75466502	Active TSS Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
50	rs562924769	chr16:75466517-75466518	Active TSS Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:68)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Schizophrenia	22958593	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	18632612	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16702952	CNVD
Medulloblastoma	16968546	CNVD
Prostate cancer	19242612	CNVD
Cancer	22429812	CNVD
Ewing''s sarcoma	21437220	CNVD
Ewing''s sarcoma	22429812	CNVD
Melanoma	18172304	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Multiple myeloma	21628407	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	17001317	CNVD
Breast cancer	17133270	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	17603634	CNVD
Prostate cancer	16573809	CNVD
Prostate cancer	17245344	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21806811	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Melanoma	22183965	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Poland''s syndrome	22110015	CNVD
Neuroblastoma	21899760	CNVD
Liver carcinoma	19366792	CNVD
Prostate cancer	21965145	CNVD
Cancer	21183584	CNVD
Ovarian cancer	20844748	CNVD
Lung cancer	18438408	CNVD
Prostate cancer	19156837	CNVD
Acute myeloid leukemia	17377590	CNVD
Breast cancer	20409316	CNVD
Hepatocellular carcinoma	16750200	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:600 , 50 per page) page: 1 2 3 4 5 6 7 ... 12

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:75432400-75466600	Weak transcription	Aorta	Aorta
2	chr16:75446600-75466400	Weak transcription	Brain Angular Gyrus	brain
3	chr16:75446600-75466400	Weak transcription	Right Ventricle	heart
4	chr16:75446800-75466000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr16:75446800-75466400	Weak transcription	Fetal Brain Female	brain
6	chr16:75446800-75466400	Weak transcription	HSMM	muscle
7	chr16:75447000-75466400	Weak transcription	Liver	Liver
8	chr16:75453600-75466400	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr16:75453800-75466400	Weak transcription	Psoas Muscle	Psoas
10	chr16:75453800-75466600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr16:75455200-75466000	Weak transcription	Rectal Smooth Muscle	rectum
12	chr16:75455600-75466400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr16:75455600-75466400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr16:75455600-75466400	Weak transcription	Primary B cells from cord blood	blood
15	chr16:75455600-75466400	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr16:75455600-75466400	Weak transcription	NH-A	brain
17	chr16:75455800-75466000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr16:75455800-75466000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr16:75455800-75466200	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr16:75455800-75466200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr16:75455800-75466200	Weak transcription	Primary hematopoietic stem cells	blood
22	chr16:75455800-75466200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr16:75455800-75466200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr16:75455800-75466200	Weak transcription	HMEC	breast
25	chr16:75455800-75466200	Weak transcription	NHEK	skin
26	chr16:75455800-75466400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr16:75455800-75466400	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr16:75455800-75466400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr16:75455800-75466400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr16:75455800-75466400	Weak transcription	Fetal Lung	lung
31	chr16:75455800-75466400	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr16:75455800-75466400	Weak transcription	A549	lung
33	chr16:75456000-75465800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr16:75456800-75466200	Weak transcription	Fetal Kidney	kidney
35	chr16:75458200-75466200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr16:75458400-75465800	Weak transcription	Adipose Nuclei	Adipose
37	chr16:75458600-75466000	Weak transcription	Ovary	ovary
38	chr16:75459200-75466200	Enhancers	HepG2	liver
39	chr16:75460600-75466200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr16:75460600-75466400	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr16:75460600-75466400	Weak transcription	NHDF-Ad	bronchial
42	chr16:75460600-75466400	Weak transcription	Osteobl	bone
43	chr16:75460800-75466400	Weak transcription	NHLF	lung
44	chr16:75461200-75466200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr16:75462000-75466400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr16:75463400-75465800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr16:75463600-75466200	Enhancers	Primary T helper cells PMA-I stimulated	--
48	chr16:75463800-75466400	Enhancers	Primary T cells fromperipheralblood	blood
49	chr16:75464200-75466400	Enhancers	Primary T helper cells fromperipheralblood	blood
50	chr16:75464400-75466600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links