Variant report

Variant	rs74661681
Chromosome Location	chr16:75465828-75465829
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:75440851..75444308-chr16:75465493..75468084,3	MCF-7	breast:
2	chr16:75465449..75469390-chr16:75587663..75590801,6	K562	blood:
3	chr16:75284907..75286555-chr16:75465225..75468013,2	MCF-7	breast:
4	chr16:75465566..75468619-chr16:75548282..75552307,4	MCF-7	breast:
5	chr16:75464062..75469543-chr16:75495268..75500189,14	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166822	Chromatin interaction
ENSG00000252122	Chromatin interaction
ENSG00000205084	Chromatin interaction
ENSG00000050820	Chromatin interaction
ENSG00000262583	Chromatin interaction
ENSG00000261717	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916502	chr16:74845880-75732365	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
2	nsv931939	chr16:75261354-75765025	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
3	nsv1065995	chr16:75373756-75626027	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
4	nsv1063718	chr16:75395969-75608071	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	64 gene(s)	inside rSNPs	diseases
5	esv2758432	chr16:75419614-75576971	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
6	esv2758657	chr16:75419614-75576971	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
7	esv32560	chr16:75465765-75471455	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:75432400-75466600	Weak transcription	Aorta	Aorta
2	chr16:75446600-75466400	Weak transcription	Brain Angular Gyrus	brain
3	chr16:75446600-75466400	Weak transcription	Right Ventricle	heart
4	chr16:75446800-75466000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr16:75446800-75466400	Weak transcription	Fetal Brain Female	brain
6	chr16:75446800-75466400	Weak transcription	HSMM	muscle
7	chr16:75447000-75466400	Weak transcription	Liver	Liver
8	chr16:75453600-75466400	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr16:75453800-75466400	Weak transcription	Psoas Muscle	Psoas
10	chr16:75453800-75466600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr16:75455200-75466000	Weak transcription	Rectal Smooth Muscle	rectum
12	chr16:75455600-75466400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr16:75455600-75466400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr16:75455600-75466400	Weak transcription	Primary B cells from cord blood	blood
15	chr16:75455600-75466400	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr16:75455600-75466400	Weak transcription	NH-A	brain
17	chr16:75455800-75466000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr16:75455800-75466000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr16:75455800-75466200	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr16:75455800-75466200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr16:75455800-75466200	Weak transcription	Primary hematopoietic stem cells	blood
22	chr16:75455800-75466200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr16:75455800-75466200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr16:75455800-75466200	Weak transcription	HMEC	breast
25	chr16:75455800-75466200	Weak transcription	NHEK	skin
26	chr16:75455800-75466400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr16:75455800-75466400	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr16:75455800-75466400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr16:75455800-75466400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr16:75455800-75466400	Weak transcription	Fetal Lung	lung
31	chr16:75455800-75466400	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr16:75455800-75466400	Weak transcription	A549	lung
33	chr16:75456800-75466200	Weak transcription	Fetal Kidney	kidney
34	chr16:75458200-75466200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr16:75458600-75466000	Weak transcription	Ovary	ovary
36	chr16:75459200-75466200	Enhancers	HepG2	liver
37	chr16:75460600-75466200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr16:75460600-75466400	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr16:75460600-75466400	Weak transcription	NHDF-Ad	bronchial
40	chr16:75460600-75466400	Weak transcription	Osteobl	bone
41	chr16:75460800-75466400	Weak transcription	NHLF	lung
42	chr16:75461200-75466200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr16:75462000-75466400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr16:75463600-75466200	Enhancers	Primary T helper cells PMA-I stimulated	--
45	chr16:75463800-75466400	Enhancers	Primary T cells fromperipheralblood	blood
46	chr16:75464200-75466400	Enhancers	Primary T helper cells fromperipheralblood	blood
47	chr16:75464400-75466600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr16:75464600-75466000	Enhancers	Brain Germinal Matrix	brain
49	chr16:75464600-75466400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
50	chr16:75464800-75466000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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