Variant report

Variant	esv3322683
Chromosome Location	chr10:25403846-25404994
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 40 )

Variant overlapped rSNPs/rCNVs (count:43 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs182177848	chr10:25403856-25403857	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs562710375	chr10:25403857-25403858	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs575600689	chr10:25403937-25403938	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs544685257	chr10:25403965-25403966	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs561261430	chr10:25404022-25404023	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs530018270	chr10:25404028-25404029	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs560052694	chr10:25404043-25404044	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs546613239	chr10:25404048-25404049	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs138575808	chr10:25404063-25404064	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs186402413	chr10:25404069-25404070	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs112353367	chr10:25404079-25404080	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs111831475	chr10:25404083-25404084	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs201512293	chr10:25404127-25404128	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs190409323	chr10:25404137-25404138	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs552449737	chr10:25404139-25404140	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs368537177	chr10:25404151-25404152	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs569432606	chr10:25404288-25404289	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs538094858	chr10:25404289-25404290	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs548250769	chr10:25404303-25404304	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs568188701	chr10:25404336-25404337	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs528777890	chr10:25404342-25404343	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs533740493	chr10:25404353-25404354	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs72782215	chr10:25404424-25404425	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs371681305	chr10:25404468-25404469	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs570716284	chr10:25404471-25404472	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs72782216	chr10:25404505-25404506	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs529666787	chr10:25404520-25404521	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs573009232	chr10:25404535-25404536	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs76179264	chr10:25404538-25404539	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs549801889	chr10:25404604-25404605	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs372290880	chr10:25404747-25404748	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs372011964	chr10:25404757-25404758	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs139838638	chr10:25404789-25404790	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs541688928	chr10:25404792-25404793	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs538414443	chr10:25404800-25404801	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs183048734	chr10:25404864-25404865	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs114531142	chr10:25404870-25404871	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs143474255	chr10:25404907-25404908	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs186973202	chr10:25404908-25404909	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs560117408	chr10:25404956-25404957	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs532449286	chr10:25404969-25404970	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs146744234	chr10:25404975-25404976	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs563072907	chr10:25404986-25404987	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:40)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21364760	CNVD
Behavioral abnormalities	21522184	CNVD
Dysmorphic features	21522184	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Myelofibrosis	22110671	CNVD
Autism	21439084	CNVD
Maculopathy	20981449	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	22237106	CNVD

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25392400-25414200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:25395000-25405000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr10:25397400-25404800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr10:25398200-25404600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr10:25402600-25404600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr10:25402600-25404600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr10:25402600-25409600	Weak transcription	Pancreas	Pancrea
8	chr10:25402800-25404800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr10:25402800-25405400	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr10:25403000-25404800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:25403200-25404800	Weak transcription	A549	lung
12	chr10:25403200-25405800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr10:25403200-25406400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:25403400-25404400	Weak transcription	Stomach Mucosa	stomach
15	chr10:25403400-25405800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr10:25403400-25406200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr10:25403400-25406800	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr10:25404600-25404800	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr10:25404600-25404800	Enhancers	Stomach Mucosa	stomach
20	chr10:25404600-25406200	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr10:25404600-25406200	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr10:25404800-25405200	Enhancers	K562	blood
23	chr10:25404800-25405800	Enhancers	H1 Cell Line	embryonic stem cell
24	chr10:25404800-25406000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr10:25404800-25406200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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