Variant report

Variant	rs560117408
Chromosome Location	chr10:25404956-25404957
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894970	chr10:25385858-25522280	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv894971	chr10:25403234-25522280	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3322683	chr10:25403846-25404994	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25392400-25414200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:25395000-25405000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr10:25402600-25409600	Weak transcription	Pancreas	Pancrea
4	chr10:25402800-25405400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr10:25403200-25405800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr10:25403200-25406400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:25403400-25405800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:25403400-25406200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr10:25403400-25406800	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr10:25404600-25406200	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr10:25404600-25406200	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr10:25404800-25405200	Enhancers	K562	blood
13	chr10:25404800-25405800	Enhancers	H1 Cell Line	embryonic stem cell
14	chr10:25404800-25406000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr10:25404800-25406200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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