Variant report

Variant	esv3324722
Chromosome Location	chrX:78268856-78334943
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-P2RY10-2	chrX:78312666-78312846	l_3936_chrX:78287196-78312846_adrenal
2	lnc-P2RY10-2	chrX:78298975-78299066	l_3936_chrX:78287196-78312846_adrenal
3	lnc-P2RY10-2	chrX:78287197-78287370	l_3936_chrX:78287196-78312846_adrenal

Extended variants
information (count: 179 )
Associated
traits (count: 40 )

Variant overlapped rSNPs/rCNVs (count:179 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs192023101	chrX:78276813-78276814	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs377419231	chrX:78276829-78276830	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs62606373	chrX:78276959-78276960	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs182657594	chrX:78277023-78277024	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs187610088	chrX:78277125-78277126	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs192910868	chrX:78277130-78277131	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs182820162	chrX:78277186-78277187	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs187470343	chrX:78277196-78277197	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs190644448	chrX:78287234-78287235	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs5912713	chrX:78287262-78287263	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs183164730	chrX:78287269-78287270	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs62606377	chrX:78287369-78287370	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs529269466	chrX:78289407-78289408	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs377200073	chrX:78289489-78289490	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs190274307	chrX:78289534-78289535	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs564750906	chrX:78289574-78289575	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs142031933	chrX:78289609-78289610	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs182854408	chrX:78289693-78289694	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs147088549	chrX:78289794-78289795	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs138443295	chrX:78289809-78289810	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs143982857	chrX:78289828-78289829	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs188852205	chrX:78289972-78289973	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs370706745	chrX:78290001-78290002	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs375028730	chrX:78290026-78290027	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs193086379	chrX:78290068-78290069	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs375171805	chrX:78290080-78290081	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs566477235	chrX:78290242-78290243	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs5912715	chrX:78290439-78290440	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs138932777	chrX:78290470-78290471	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs372344782	chrX:78290494-78290495	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs533525270	chrX:78290512-78290513	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs4826087	chrX:78290637-78290638	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs533216632	chrX:78290659-78290660	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs5959221	chrX:78290749-78290750	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs139625157	chrX:78290801-78290802	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs5959222	chrX:78290889-78290890	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs6619152	chrX:78291055-78291056	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs185834233	chrX:78291058-78291059	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs548781627	chrX:78291061-78291062	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs62606379	chrX:78291098-78291099	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs187537048	chrX:78291100-78291101	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs142156021	chrX:78291164-78291165	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs201894986	chrX:78291227-78291228	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs151231811	chrX:78291228-78291229	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs369461180	chrX:78291286-78291287	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs139183155	chrX:78291306-78291307	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs138242958	chrX:78291336-78291337	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs149883465	chrX:78291370-78291371	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs191170914	chrX:78291411-78291412	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs183669408	chrX:78291417-78291418	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:40)

Disease	PMID	Source
Neuroblastoma	18923191	CNVD
Burkitt''s lymphoma	20823134	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Astrocytoma	17387387	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Metanephric adenoma	20802469	CNVD
Medulloblastoma	21979893	CNVD
Schizophrenia	23904455	CNVD
Olfactory neuroblastoma	18408657	CNVD
infertile	22614455	CNVD
Acute myeloid leukemia	20729466	CNVD
Autism	22495311	CNVD
Cancer	20581869	CNVD
Multiple myeloma	20724749	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
lymphocytic leukemia	21291569	CNVD
Follicular lymphoma	20505157	CNVD
primary effusion lymphomas	17116491	CNVD
Testicular germ cell tumor	18059402	CNVD
Testicular cancer	18059402	CNVD
Seminomas	18059402	CNVD
Glioblastoma multiforme	19960244	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	17387387	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Cancer	22429812	CNVD
Cancer	16751803	CNVD
Premature ovarian failure	20952765	CNVD
Astrocytoma	22246337	CNVD
Mental retardation	17339581	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Breast cancer	21611746	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:78276800-78277200	Enhancers	Dnd41	blood
2	chrX:78289400-78292200	Enhancers	Primary T cells from cord blood	blood
3	chrX:78289400-78292600	Enhancers	Dnd41	blood
4	chrX:78289600-78292000	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chrX:78289800-78290000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chrX:78289800-78290000	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chrX:78289800-78290200	Enhancers	Primary hematopoietic stem cells	blood
8	chrX:78289800-78291000	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chrX:78289800-78291000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chrX:78289800-78292400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chrX:78290000-78290400	Enhancers	Primary B cells from cord blood	blood
12	chrX:78290000-78290600	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chrX:78290200-78291200	Weak transcription	Primary hematopoietic stem cells	blood
14	chrX:78290200-78291600	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chrX:78290200-78291600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chrX:78290400-78290600	Weak transcription	Primary B cells from cord blood	blood
17	chrX:78290400-78290800	Enhancers	Fetal Kidney	kidney
18	chrX:78290600-78291000	Enhancers	Primary B cells from cord blood	blood
19	chrX:78290600-78292600	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chrX:78290800-78291400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chrX:78291000-78291200	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chrX:78291000-78291400	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chrX:78291000-78291400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chrX:78291000-78291800	Weak transcription	Primary B cells from cord blood	blood
25	chrX:78291400-78291600	Enhancers	Primary hematopoietic stem cells	blood
26	chrX:78291400-78292000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chrX:78291400-78292200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
28	chrX:78291400-78292400	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chrX:78291400-78292400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chrX:78291600-78292000	Enhancers	Primary monocytes fromperipheralblood	blood
31	chrX:78291600-78292000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chrX:78291600-78292000	Enhancers	Fetal Thymus	thymus
33	chrX:78291600-78292400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
34	chrX:78291800-78292000	Enhancers	Primary T killer memory cells from peripheral blood	blood
35	chrX:78291800-78292200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chrX:78291800-78292200	Enhancers	Primary B cells from cord blood	blood
37	chrX:78291800-78292200	Enhancers	Primary T cells fromperipheralblood	blood
38	chrX:78291800-78292400	Enhancers	Primary hematopoietic stem cells short term culture	blood
39	chrX:78292000-78292200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chrX:78315600-78316000	Enhancers	Primary neutrophils fromperipheralblood	blood
41	chrX:78321000-78321800	Enhancers	GM12878-XiMat	blood
42	chrX:78321000-78321800	Enhancers	Monocytes-CD14+_RO01746	blood
43	chrX:78321000-78322000	Enhancers	Primary monocytes fromperipheralblood	blood
44	chrX:78321000-78322600	Enhancers	Primary neutrophils fromperipheralblood	blood
45	chrX:78321000-78322600	Enhancers	Primary B cells from peripheral blood	blood
46	chrX:78321800-78324000	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chrX:78322000-78324000	Weak transcription	Primary monocytes fromperipheralblood	blood
48	chrX:78322600-78323800	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chrX:78323800-78325000	Enhancers	Primary neutrophils fromperipheralblood	blood
50	chrX:78324000-78325000	Enhancers	Primary monocytes fromperipheralblood	blood

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