Variant report

Variant	rs5959221
Chromosome Location	chrX:78290749-78290750
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs5912198	1.00[CEU][hapmap];0.89[YRI][hapmap]
rs5959211	1.00[CEU][hapmap];0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3394349	chrX:77977388-78779139	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
2	esv3324722	chrX:78268856-78334943	Enhancers Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:78289400-78292200	Enhancers	Primary T cells from cord blood	blood
2	chrX:78289400-78292600	Enhancers	Dnd41	blood
3	chrX:78289600-78292000	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chrX:78289800-78291000	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chrX:78289800-78291000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chrX:78289800-78292400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chrX:78290200-78291200	Weak transcription	Primary hematopoietic stem cells	blood
8	chrX:78290200-78291600	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chrX:78290200-78291600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chrX:78290400-78290800	Enhancers	Fetal Kidney	kidney
11	chrX:78290600-78291000	Enhancers	Primary B cells from cord blood	blood
12	chrX:78290600-78292600	Enhancers	Primary T helper cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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