Variant report

Variant	esv3330092
Chromosome Location	chr5:35708315-35709835
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35705714..35707847-chr5:35709289..35711545,3	MCF-7	breast:

Extended variants
information (count: 96 )
Associated
traits (count: 99 )

Variant overlapped rSNPs/rCNVs (count:96 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs555908871	chr5:35708431-35708432	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs12515119	chr5:35708492-35708493	Strong transcription Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs544739479	chr5:35708543-35708544	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs138236711	chr5:35708572-35708573	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs182150509	chr5:35708593-35708594	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs141181559	chr5:35708596-35708597	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs371624880	chr5:35708652-35708653	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs374460081	chr5:35708655-35708656	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs73084359	chr5:35708666-35708667	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs79793165	chr5:35708667-35708668	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs377444897	chr5:35708670-35708671	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs376790724	chr5:35708686-35708687	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs62351901	chr5:35708687-35708688	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs79082581	chr5:35708689-35708690	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs74626425	chr5:35708690-35708691	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs111118708	chr5:35708693-35708694	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs62351902	chr5:35708697-35708698	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs386687172	chr5:35708707-35708708	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs116018018	chr5:35708709-35708710	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs371159960	chr5:35708714-35708715	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs376064685	chr5:35708717-35708718	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs368614270	chr5:35708718-35708719	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs371641323	chr5:35708725-35708726	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs373811119	chr5:35708726-35708727	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs367868621	chr5:35708727-35708728	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs370032038	chr5:35708728-35708729	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs371705331	chr5:35708734-35708735	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs199806716	chr5:35708739-35708740	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs376364500	chr5:35708746-35708747	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs369576738	chr5:35708749-35708750	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs114808799	chr5:35708751-35708752	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs142102161	chr5:35708752-35708753	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs372024579	chr5:35708762-35708763	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs375352899	chr5:35708763-35708764	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs371675762	chr5:35708767-35708768	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs369981766	chr5:35708770-35708771	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs373045441	chr5:35708772-35708773	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs79526390	chr5:35708781-35708782	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs370251373	chr5:35708782-35708783	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs374727054	chr5:35708784-35708785	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs200139978	chr5:35708789-35708790	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs200730170	chr5:35708790-35708791	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs201149259	chr5:35708794-35708795	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs376789856	chr5:35708795-35708796	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs371723240	chr5:35708797-35708798	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs75296710	chr5:35708799-35708800	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs111490375	chr5:35708808-35708809	Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs76121336	chr5:35708809-35708810	Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs549615911	chr5:35708821-35708822	Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs386687173	chr5:35708833-35708834	Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:99)

Disease	PMID	Source
Myofibroblastic sarcoma	19369631	CNVD
Cervical squamous cell carcinoma	21590768	CNVD
Non-small cell lung cancer	20864512	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	16783165	CNVD
Thyroid cancer	19087340	CNVD
Liposarcoma	21253554	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Cervical Cancer	21857958	CNVD
Cervical cancer	21062161	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	19960244	CNVD
Oral cancer	21386901	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Ewing''s sarcoma	17952124	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Cervical cancer	18559093	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Metanephric adenoma	20802469	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Medulloblastoma	21979893	CNVD
Phyllodes tumor	17334353	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
Colorectal cancer	21645411	CNVD
Gastric cancer	22152101	CNVD
Oesophago-gastric ulcer	22152101	CNVD
Ovarian cancer	21781307	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Multiple myeloma	17550852	CNVD
prenatal diagnosis	22389664	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Bladder cancer	21909424	CNVD
DNA damage stimulus	22844521	CNVD
DNA repair	22844521	CNVD
Breast cancer	21785460	CNVD
Spinal muscular atrophy	22422766	CNVD
Spinal muscular atrophy	22558076	CNVD
Spinal muscular atrophy	21320981	CNVD
Spinal muscular atrophy	21762474	CNVD
Breast cancer	21858162	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Cancer	16751803	CNVD
Breast cancer	16608533	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Intellectual disability	22102821	CNVD
Prostate cancer	21965145	CNVD
Cancer	21183584	CNVD
Ovarian cancer	20844748	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Breast cancer	17603634	CNVD
Non-small cell lung cancer	19010865	CNVD
Glioblastoma multiforme	22286061	CNVD
Ovarian cancer	21720365	CNVD
Lung cancer	18438408	CNVD
Glioma	20126413	CNVD
Non-small cell lung cancer	21829676	CNVD
Breast cancer	22032731	CNVD
Esophageal cancer	20955586	CNVD
Prostate cancer	18632612	CNVD
Medulloblastoma	19270706	CNVD
Breast cancer	19553991	CNVD
Lung cancer	19553991	CNVD
Melanoma	19553991	CNVD
Ovarian cancer	19553991	CNVD
Prostate cancer	19553991	CNVD
Non-small cell lung cancer	17156491	CNVD
Breast cancer	17133270	CNVD
Congenital anomalies of the kidney and urinary tract	18694510	CNVD
Breast cancer	17393978	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Acute lymphoblastic leukemia	17640729	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Lung cancer	19153074	CNVD
Breast cancer	21364760	CNVD
Cornelia de Lange syndrome	21085971	CNVD
Autism	21701786	CNVD
Cervical cancer	16585170	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35672000-35708600	Weak transcription	Gastric	stomach
2	chr5:35684600-35708600	Weak transcription	Fetal Kidney	kidney
3	chr5:35686200-35709600	Weak transcription	Fetal Lung	lung
4	chr5:35693800-35714000	Weak transcription	Brain Anterior Caudate	brain
5	chr5:35695000-35711000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr5:35697000-35710600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr5:35697000-35717000	Weak transcription	Left Ventricle	heart
8	chr5:35697200-35709600	Weak transcription	Right Ventricle	heart
9	chr5:35697600-35709000	Weak transcription	Primary hematopoietic stem cells	blood
10	chr5:35697600-35709200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr5:35699000-35711200	Weak transcription	Ovary	ovary
12	chr5:35699000-35711600	Weak transcription	Lung	lung
13	chr5:35699400-35720600	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr5:35702400-35709800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr5:35706400-35711000	Weak transcription	Brain Substantia Nigra	brain
16	chr5:35706800-35708800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr5:35708000-35708600	Weak transcription	Pancreas	Pancrea
18	chr5:35708000-35709400	Weak transcription	Primary T cells from cord blood	blood
19	chr5:35708200-35710800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr5:35708600-35708800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr5:35708600-35708800	ZNF genes & repeats	Fetal Intestine Large	intestine
22	chr5:35708600-35708800	ZNF genes & repeats	Gastric	stomach
23	chr5:35708600-35708800	ZNF genes & repeats	Pancreas	Pancrea
24	chr5:35708600-35709600	Strong transcription	Fetal Kidney	kidney
25	chr5:35708800-35709000	Weak transcription	Gastric	stomach
26	chr5:35708800-35709600	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr5:35708800-35710000	Weak transcription	Fetal Intestine Large	intestine
28	chr5:35709000-35709400	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr5:35709000-35710000	Enhancers	Primary hematopoietic stem cells	blood
30	chr5:35709000-35710000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr5:35709200-35710000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr5:35709400-35709600	Enhancers	Primary T cells from cord blood	blood
33	chr5:35709600-35710800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr5:35709600-35711800	Weak transcription	Fetal Kidney	kidney

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