Variant report

Variant	rs549615911
Chromosome Location	chr5:35708821-35708822
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv880510	chr5:35659239-35709184	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv881146	chr5:35659239-35714851	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv515831	chr5:35706279-35723861	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv3330092	chr5:35708315-35709835	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3332130	chr5:35708560-35709039	Weak transcription Enhancers ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	diseases
7	esv3393787	chr5:35708626-35708845	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35686200-35709600	Weak transcription	Fetal Lung	lung
2	chr5:35693800-35714000	Weak transcription	Brain Anterior Caudate	brain
3	chr5:35695000-35711000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr5:35697000-35710600	Weak transcription	Fetal Muscle Trunk	muscle
5	chr5:35697000-35717000	Weak transcription	Left Ventricle	heart
6	chr5:35697200-35709600	Weak transcription	Right Ventricle	heart
7	chr5:35697600-35709000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr5:35697600-35709200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr5:35699000-35711200	Weak transcription	Ovary	ovary
10	chr5:35699000-35711600	Weak transcription	Lung	lung
11	chr5:35699400-35720600	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr5:35702400-35709800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr5:35706400-35711000	Weak transcription	Brain Substantia Nigra	brain
14	chr5:35708000-35709400	Weak transcription	Primary T cells from cord blood	blood
15	chr5:35708200-35710800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr5:35708600-35709600	Strong transcription	Fetal Kidney	kidney
17	chr5:35708800-35709000	Weak transcription	Gastric	stomach
18	chr5:35708800-35709600	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr5:35708800-35710000	Weak transcription	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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