Variant report

Variant	esv3330358
Chromosome Location	chr20:29827324-29829139
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 240 )
Associated
traits (count: 68 )

Variant overlapped rSNPs/rCNVs (count:240 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs545096892	chr20:29827326-29827327	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs558234657	chr20:29827327-29827328	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs62207796	chr20:29827331-29827332	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs150358341	chr20:29827336-29827337	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs62207797	chr20:29827341-29827342	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs575218408	chr20:29827352-29827353	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs62207798	chr20:29827360-29827361	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs543687042	chr20:29827366-29827367	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs552048935	chr20:29827367-29827368	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs368987170	chr20:29827371-29827372	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs184570516	chr20:29827372-29827373	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs76027728	chr20:29827377-29827378	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs79928315	chr20:29827379-29827380	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs74617276	chr20:29827381-29827382	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs79182167	chr20:29827383-29827384	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs546390661	chr20:29827405-29827406	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs138474668	chr20:29827406-29827407	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs144486260	chr20:29827409-29827410	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs144519309	chr20:29827411-29827412	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs138801734	chr20:29827420-29827421	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs146158523	chr20:29827423-29827424	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs542862564	chr20:29827427-29827428	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs113105675	chr20:29827434-29827435	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs559902121	chr20:29827442-29827443	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs528538227	chr20:29827458-29827459	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs558687668	chr20:29827467-29827468	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs551872158	chr20:29827482-29827483	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs571527766	chr20:29827483-29827484	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs530966792	chr20:29827490-29827491	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs576972430	chr20:29827495-29827496	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs567611140	chr20:29827530-29827531	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs113352732	chr20:29827546-29827547	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs546774780	chr20:29827547-29827548	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs189039545	chr20:29827556-29827557	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs566673812	chr20:29827569-29827570	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs538327444	chr20:29827581-29827582	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs541067815	chr20:29827605-29827606	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs575115707	chr20:29827609-29827610	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs559295126	chr20:29827611-29827612	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs529970655	chr20:29827616-29827617	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs78633667	chr20:29827631-29827632	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs6088264	chr20:29827638-29827639	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs542925659	chr20:29827643-29827644	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs559660112	chr20:29827645-29827646	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs573411755	chr20:29827661-29827662	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs7262841	chr20:29827674-29827675	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs565415503	chr20:29827678-29827679	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs530923970	chr20:29827680-29827681	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs530642145	chr20:29827681-29827682	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs571138539	chr20:29827695-29827696	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:68)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Medulloblastoma	21979893	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Colorectal cancer	21645411	CNVD
Autism	22495311	CNVD
Anaplastic large cell lymphoma	18179710	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Chordoma	18071362	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21806811	CNVD
Melanoma	21693616	CNVD
Astrocytoma	17387387	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
colon cancer	17210682	CNVD
Colorectal cancer	20709793	CNVD
Breast cancer	22028636	CNVD
Breast cancer	21264507	CNVD
Thyroid cancer	19087340	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Soft tissue tumor	16732325	CNVD
Colorectal cancer	19359472	CNVD
Gastric cancer	17167181	CNVD
Myeloproliferative neoplasm	19047681	CNVD
Breast cancer	17899364	CNVD
Colorectal cancer	16272173	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Bladder cancer	21909424	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Colorectal cancer	22860045	CNVD
Ovarian cancer	20844748	CNVD
Non-small cell lung cancer	21829676	CNVD
Breast cancer	17603634	CNVD
Melanoma	18172304	CNVD
Breast cancer	16608533	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
early-passage human iPS cells	21368824	CNVD
Lung cancer	18438408	CNVD
Gastric cancer	16891809	CNVD
Prostate cancer	16573809	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17133270	CNVD
Oral cancer	21386901	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Cancer	20164920	CNVD
Melanoma	20877625	CNVD
Pancreatic cancer	17952125	CNVD
Gastric cancer	22014070	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:29803800-29833200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr20:29803800-29833200	ZNF genes & repeats	Primary T cells from cord blood	blood
3	chr20:29803800-29833200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
4	chr20:29803800-29833200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
5	chr20:29803800-29833200	ZNF genes & repeats	Brain Hippocampus Middle	brain
6	chr20:29803800-29833200	ZNF genes & repeats	Fetal Kidney	kidney
7	chr20:29803800-29833200	ZNF genes & repeats	Fetal Lung	lung
8	chr20:29803800-29833200	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
9	chr20:29803800-29833400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
10	chr20:29803800-29833400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr20:29803800-29833400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr20:29803800-29833400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
13	chr20:29803800-29833400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
14	chr20:29803800-29833400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
15	chr20:29803800-29833400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
16	chr20:29803800-29833400	ZNF genes & repeats	Adipose Nuclei	Adipose
17	chr20:29803800-29833400	ZNF genes & repeats	Liver	Liver
18	chr20:29803800-29833400	ZNF genes & repeats	Brain Substantia Nigra	brain
19	chr20:29803800-29833400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
20	chr20:29803800-29833400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
21	chr20:29803800-29833400	ZNF genes & repeats	Gastric	stomach
22	chr20:29803800-29833400	ZNF genes & repeats	Rectal Smooth Muscle	rectum
23	chr20:29803800-29833400	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
24	chr20:29803800-29833400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
25	chr20:29803800-29833600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
26	chr20:29803800-29833600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
27	chr20:29803800-29833800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
28	chr20:29804000-29833200	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
29	chr20:29804000-29833200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
30	chr20:29804000-29833200	ZNF genes & repeats	Dnd41	blood
31	chr20:29804000-29833400	ZNF genes & repeats	Brain Anterior Caudate	brain
32	chr20:29804000-29833400	ZNF genes & repeats	Brain Cingulate Gyrus	brain
33	chr20:29804000-29833400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
34	chr20:29804000-29833400	ZNF genes & repeats	Fetal Brain Male	brain
35	chr20:29804000-29833400	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
36	chr20:29804000-29833600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
37	chr20:29804200-29833400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
38	chr20:29804400-29833000	ZNF genes & repeats	HepG2	liver
39	chr20:29804400-29833200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
40	chr20:29804400-29833400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
41	chr20:29804600-29829800	ZNF genes & repeats	Primary B cells from cord blood	blood
42	chr20:29808400-29833200	ZNF genes & repeats	K562	blood
43	chr20:29811800-29833200	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
44	chr20:29811800-29833200	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
45	chr20:29812000-29833200	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
46	chr20:29812000-29833200	ZNF genes & repeats	HUVEC	blood vessel
47	chr20:29812000-29833400	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr20:29813000-29833200	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
49	chr20:29813400-29833000	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
50	chr20:29815000-29833400	ZNF genes & repeats	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links