Variant report

Variant	rs6088264
Chromosome Location	chr20:29827638-29827639
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 132 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs1080568	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12481529	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13045866	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1474945	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs1884743	1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs1980582	0.90[ASN][1000 genomes]
rs2076373	0.85[CHB][hapmap];0.80[JPT][hapmap]
rs2076374	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2076375	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2143191	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs2180566	0.85[CHB][hapmap]
rs2206381	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs2206382	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs2206383	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs2223527	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs2295500	0.89[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.80[EUR][1000 genomes]
rs2295501	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs2376538	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2376858	0.89[CEU][hapmap];0.84[CHB][hapmap]
rs35293804	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4243975	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4300919	0.89[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap]
rs4333000	0.90[ASN][1000 genomes]
rs4525766	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4911191	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4911211	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4911239	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4911274	0.89[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap]
rs4911306	0.85[CHB][hapmap];0.80[JPT][hapmap]
rs4911329	0.85[CHB][hapmap];0.80[JPT][hapmap]
rs4911432	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4911529	0.92[ASN][1000 genomes]
rs4911530	0.91[ASN][1000 genomes]
rs4911531	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4911555	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4911557	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs5001275	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs6057649	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs6057860	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6057963	0.80[ASN][1000 genomes]
rs6058066	0.82[ASN][1000 genomes]
rs6058399	0.88[ASN][1000 genomes]
rs6058531	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs6058918	0.83[JPT][hapmap]
rs6059128	0.84[CHB][hapmap]
rs6059238	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6059332	0.82[ASN][1000 genomes]
rs6059335	0.85[CHB][hapmap];0.80[JPT][hapmap]
rs6059724	0.93[ASN][1000 genomes]
rs6059955	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6059977	0.91[ASN][1000 genomes]
rs6060006	0.93[ASN][1000 genomes]
rs6060100	0.91[ASN][1000 genomes]
rs6061178	0.95[CHB][hapmap];0.83[JPT][hapmap]
rs6061207	0.81[ASN][1000 genomes]
rs6061213	0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs6087422	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6087423	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6087445	0.85[CHB][hapmap];0.80[JPT][hapmap]
rs6087464	0.88[CEU][hapmap];0.85[CHB][hapmap];0.80[JPT][hapmap]
rs6087468	0.89[CEU][hapmap];0.85[CHB][hapmap];0.80[JPT][hapmap]
rs6087777	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6087831	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6087852	0.88[ASN][1000 genomes]
rs6087854	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6087927	0.81[ASN][1000 genomes]
rs6088036	0.88[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap]
rs6088109	0.85[CHB][hapmap];0.80[JPT][hapmap]
rs6088112	0.88[CEU][hapmap];0.85[CHB][hapmap];0.80[JPT][hapmap]
rs6088144	0.89[CEU][hapmap];0.85[CHB][hapmap];0.80[JPT][hapmap];0.80[EUR][1000 genomes]
rs6088147	0.80[EUR][1000 genomes]
rs6088148	0.80[EUR][1000 genomes]
rs6088167	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6088215	0.85[CHB][hapmap];0.80[JPT][hapmap]
rs6088591	0.93[ASN][1000 genomes]
rs6088748	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6089126	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs6120006	0.93[ASN][1000 genomes]
rs6120575	0.93[ASN][1000 genomes]
rs6141372	0.81[ASN][1000 genomes]
rs6141536	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6141934	0.85[CHB][hapmap];0.80[JPT][hapmap]
rs6142150	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6142220	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6142241	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62206833	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs709045	0.89[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.81[EUR][1000 genomes]
rs732861	0.92[ASN][1000 genomes]
rs734418	0.89[CEU][hapmap];0.85[CHB][hapmap]
rs760996	0.85[CHB][hapmap];0.80[JPT][hapmap]
rs8183998	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs975075	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9798579	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:39 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3342568	chr20:29803909-29834289	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
2	esv3362807	chr20:29803909-29834289	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
3	esv3392375	chr20:29803909-29834289	ZNF genes & repeats Active TSS Bivalent/Poised TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
4	esv3412704	chr20:29803909-29834289	Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
5	esv3445374	chr20:29803909-29834289	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
6	esv3451819	chr20:29803909-29834389	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv964448	chr20:29803909-29857200	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv10142	chr20:29804062-29833443	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
9	nsv585884	chr20:29804208-29828120	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
10	nsv585885	chr20:29804208-29830347	Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
11	nsv585886	chr20:29804208-29832022	ZNF genes & repeats Bivalent/Poised TSS Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
12	nsv585887	chr20:29804208-29833609	ZNF genes & repeats Active TSS Bivalent/Poised TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
13	nsv585888	chr20:29804208-29844859	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
14	nsv585893	chr20:29804293-29828120	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
15	nsv585894	chr20:29804293-29830347	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
16	esv1805772	chr20:29804293-29832022	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
17	esv1814224	chr20:29804293-29832022	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
18	esv1819293	chr20:29804293-29832022	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
19	esv1838661	chr20:29804293-29832022	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
20	nsv585895	chr20:29804293-29832022	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
21	esv1800744	chr20:29804293-29860684	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
22	esv1806005	chr20:29804293-29860684	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
23	esv1809844	chr20:29804293-29860684	Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
24	esv1821656	chr20:29804293-29860684	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
25	esv1829940	chr20:29804293-29860684	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
26	esv1836734	chr20:29804293-29860684	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
27	esv1839077	chr20:29804293-29860684	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
28	esv1850349	chr20:29804293-29860684	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
29	esv994391	chr20:29804598-29832573	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
30	nsv585898	chr20:29805100-29830347	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS	n/a	n/a	inside rSNPs	diseases
31	nsv585899	chr20:29805100-29832022	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
32	nsv585900	chr20:29805820-29832022	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
33	esv2485082	chr20:29806791-29833789	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
34	nsv585902	chr20:29810691-29830347	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
35	nsv585903	chr20:29810691-29832022	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
36	nsv585907	chr20:29814380-29830347	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
37	esv12647	chr20:29814555-29832573	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS	n/a	n/a	inside rSNPs	diseases
38	nsv585908	chr20:29816499-29830347	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
39	esv3330358	chr20:29827324-29829139	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:29803800-29833200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr20:29803800-29833200	ZNF genes & repeats	Primary T cells from cord blood	blood
3	chr20:29803800-29833200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
4	chr20:29803800-29833200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
5	chr20:29803800-29833200	ZNF genes & repeats	Brain Hippocampus Middle	brain
6	chr20:29803800-29833200	ZNF genes & repeats	Fetal Kidney	kidney
7	chr20:29803800-29833200	ZNF genes & repeats	Fetal Lung	lung
8	chr20:29803800-29833200	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
9	chr20:29803800-29833400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
10	chr20:29803800-29833400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr20:29803800-29833400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr20:29803800-29833400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
13	chr20:29803800-29833400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
14	chr20:29803800-29833400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
15	chr20:29803800-29833400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
16	chr20:29803800-29833400	ZNF genes & repeats	Adipose Nuclei	Adipose
17	chr20:29803800-29833400	ZNF genes & repeats	Liver	Liver
18	chr20:29803800-29833400	ZNF genes & repeats	Brain Substantia Nigra	brain
19	chr20:29803800-29833400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
20	chr20:29803800-29833400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
21	chr20:29803800-29833400	ZNF genes & repeats	Gastric	stomach
22	chr20:29803800-29833400	ZNF genes & repeats	Rectal Smooth Muscle	rectum
23	chr20:29803800-29833400	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
24	chr20:29803800-29833400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
25	chr20:29803800-29833600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
26	chr20:29803800-29833600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
27	chr20:29803800-29833800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
28	chr20:29804000-29833200	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
29	chr20:29804000-29833200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
30	chr20:29804000-29833200	ZNF genes & repeats	Dnd41	blood
31	chr20:29804000-29833400	ZNF genes & repeats	Brain Anterior Caudate	brain
32	chr20:29804000-29833400	ZNF genes & repeats	Brain Cingulate Gyrus	brain
33	chr20:29804000-29833400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
34	chr20:29804000-29833400	ZNF genes & repeats	Fetal Brain Male	brain
35	chr20:29804000-29833400	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
36	chr20:29804000-29833600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
37	chr20:29804200-29833400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
38	chr20:29804400-29833000	ZNF genes & repeats	HepG2	liver
39	chr20:29804400-29833200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
40	chr20:29804400-29833400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
41	chr20:29804600-29829800	ZNF genes & repeats	Primary B cells from cord blood	blood
42	chr20:29808400-29833200	ZNF genes & repeats	K562	blood
43	chr20:29811800-29833200	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
44	chr20:29811800-29833200	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
45	chr20:29812000-29833200	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
46	chr20:29812000-29833200	ZNF genes & repeats	HUVEC	blood vessel
47	chr20:29812000-29833400	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr20:29813000-29833200	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
49	chr20:29813400-29833000	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
50	chr20:29815000-29833400	ZNF genes & repeats	Fetal Heart	heart

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