Variant report

Variant	esv3335977
Chromosome Location	chr10:90795772-90803270
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 237 )
Associated
traits (count: 88 )

Variant overlapped rSNPs/rCNVs (count:237 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs191540522	chr10:90795796-90795797	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs79595633	chr10:90795804-90795805	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs538338162	chr10:90795884-90795885	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs556152845	chr10:90795887-90795888	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs10458738	chr10:90795907-90795908	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
6	rs546560329	chr10:90795912-90795913	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs73365618	chr10:90795974-90795975	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs79346160	chr10:90796006-90796007	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs35617163	chr10:90796057-90796058	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs34158968	chr10:90796060-90796061	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs561575114	chr10:90796110-90796111	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs7898005	chr10:90796151-90796152	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
13	rs562004069	chr10:90796227-90796228	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs574099219	chr10:90796240-90796241	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs369927380	chr10:90796285-90796286	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs371077694	chr10:90796316-90796317	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs12355223	chr10:90796350-90796351	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs562944667	chr10:90796404-90796405	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs533057685	chr10:90796455-90796456	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs551217578	chr10:90796484-90796485	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs560616376	chr10:90796530-90796531	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs182517601	chr10:90796564-90796565	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs7901768	chr10:90796569-90796570	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs188024307	chr10:90796581-90796582	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs552534627	chr10:90796584-90796585	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs537980626	chr10:90796615-90796616	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs201693384	chr10:90796643-90796644	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs77531190	chr10:90796659-90796660	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs373505452	chr10:90796726-90796727	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs571309837	chr10:90796856-90796857	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs376365237	chr10:90796878-90796879	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs12360110	chr10:90796905-90796906	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs528813582	chr10:90796911-90796912	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs11815246	chr10:90796947-90796948	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs573592481	chr10:90797003-90797004	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs550421523	chr10:90797006-90797007	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs567244493	chr10:90797024-90797025	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs534102713	chr10:90797041-90797042	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs555952321	chr10:90797085-90797086	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs192505321	chr10:90797104-90797105	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs183218068	chr10:90797146-90797147	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs562647814	chr10:90797236-90797237	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs577577139	chr10:90797241-90797242	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs112318249	chr10:90797333-90797334	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs398114616	chr10:90797339-90797340	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs545018758	chr10:90797343-90797344	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs559988140	chr10:90797346-90797347	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs187929983	chr10:90797370-90797371	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs11815318	chr10:90797373-90797374	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs192008467	chr10:90797463-90797464	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:88)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21364760	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
Cancer	20164919	CNVD
small cell lung cancer	20016488	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Colorectal cancer	19359472	CNVD
Neurocytoma	17123091	CNVD
Prostate cancer	16461572	CNVD
Basal-like breast cancer	18066063	CNVD
Effusion lymphoma	18079361	CNVD
Lung cancer	21911935	CNVD
Myelofibrosis	22110671	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	22048815	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Glioblastoma multiforme	19435819	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Sezary syndrome	18413736	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Bipolar disorder	19114987	CNVD
Melanoma	17363583	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90771800-90808600	Weak transcription	Primary T cells from cord blood	blood
2	chr10:90772600-90795800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr10:90780800-90804200	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr10:90789800-90802000	Weak transcription	Ovary	ovary
5	chr10:90790000-90802800	Weak transcription	Fetal Intestine Small	intestine
6	chr10:90792000-90801800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:90792200-90807200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr10:90792800-90796800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr10:90792800-90801600	Weak transcription	Esophagus	oesophagus
10	chr10:90792800-90801800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr10:90792800-90801800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr10:90792800-90807200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr10:90792800-90807400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr10:90792800-90814600	Weak transcription	GM12878-XiMat	blood
15	chr10:90793000-90796800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:90793000-90801800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr10:90793200-90801600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr10:90793200-90801800	Weak transcription	HMEC	breast
19	chr10:90794200-90816800	Weak transcription	Left Ventricle	heart
20	chr10:90794800-90796000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr10:90794800-90797800	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr10:90795000-90795800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:90795000-90795800	Enhancers	Adipose Nuclei	Adipose
24	chr10:90795000-90795800	Enhancers	Placenta	Placenta
25	chr10:90795000-90795800	Enhancers	Right Atrium	heart
26	chr10:90795000-90795800	Enhancers	NHDF-Ad	bronchial
27	chr10:90795000-90796600	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr10:90795400-90795800	Enhancers	Primary neutrophils fromperipheralblood	blood
29	chr10:90795600-90795800	Enhancers	H9 Cell Line	embryonic stem cell
30	chr10:90795800-90796800	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr10:90795800-90801800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr10:90795800-90803800	Weak transcription	Right Atrium	heart
33	chr10:90796000-90807000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr10:90796600-90797000	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr10:90796800-90797400	Enhancers	Primary neutrophils fromperipheralblood	blood
36	chr10:90796800-90797400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr10:90796800-90797600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr10:90797000-90798000	Enhancers	Primary monocytes fromperipheralblood	blood
39	chr10:90799600-90801000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr10:90801000-90801200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
41	chr10:90801000-90801400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr10:90801200-90809400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr10:90801400-90829400	Weak transcription	Aorta	Aorta
44	chr10:90801600-90803000	Enhancers	Esophagus	oesophagus
45	chr10:90801600-90803200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr10:90801600-90803400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr10:90801600-90803400	Enhancers	NHEK	skin
48	chr10:90801800-90802400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
49	chr10:90801800-90802600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr10:90801800-90802600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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