Variant report

Variant	rs10458738
Chromosome Location	chr10:90795907-90795908
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10509563	0.91[CEU][hapmap]
rs1571018	0.80[AMR][1000 genomes]
rs2863214	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7100350	0.91[CEU][hapmap]
rs7901768	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7914848	0.91[CEU][hapmap]
rs7915156	0.83[YRI][hapmap]
rs7919067	0.91[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv831943	chr10:90664836-90865834	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	esv3345168	chr10:90793772-90798470	Weak transcription Enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases
5	esv10647	chr10:90794988-90803055	Enhancers Weak transcription Genic enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases
6	esv3335977	chr10:90795772-90803270	Strong transcription Enhancers Weak transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10458738	IFIT5	cis	cerebellum	SCAN
rs10458738	HECTD2	cis	cerebellum	SCAN

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90771800-90808600	Weak transcription	Primary T cells from cord blood	blood
2	chr10:90780800-90804200	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr10:90789800-90802000	Weak transcription	Ovary	ovary
4	chr10:90790000-90802800	Weak transcription	Fetal Intestine Small	intestine
5	chr10:90792000-90801800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:90792200-90807200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr10:90792800-90796800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr10:90792800-90801600	Weak transcription	Esophagus	oesophagus
9	chr10:90792800-90801800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr10:90792800-90801800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr10:90792800-90807200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr10:90792800-90807400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr10:90792800-90814600	Weak transcription	GM12878-XiMat	blood
14	chr10:90793000-90796800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr10:90793000-90801800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr10:90793200-90801600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr10:90793200-90801800	Weak transcription	HMEC	breast
18	chr10:90794200-90816800	Weak transcription	Left Ventricle	heart
19	chr10:90794800-90796000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:90794800-90797800	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr10:90795000-90796600	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr10:90795800-90796800	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr10:90795800-90801800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr10:90795800-90803800	Weak transcription	Right Atrium	heart

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