Variant report

Variant	esv3345168
Chromosome Location	chr10:90793772-90798470
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 178 )
Associated
traits (count: 87 )

Variant overlapped rSNPs/rCNVs (count:178 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs548524496	chr10:90793808-90793809	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs112944614	chr10:90793847-90793848	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs537174426	chr10:90793878-90793879	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs552599917	chr10:90793907-90793908	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs570897686	chr10:90793909-90793910	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs372554808	chr10:90793922-90793923	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs563093650	chr10:90793951-90793952	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs11202941	chr10:90793960-90793961	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs113069355	chr10:90794005-90794006	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs58196003	chr10:90794006-90794007	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs571871333	chr10:90794007-90794008	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs34037946	chr10:90794027-90794028	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs77972203	chr10:90794028-90794029	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs574665350	chr10:90794069-90794070	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs544698892	chr10:90794078-90794079	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs139406562	chr10:90794095-90794096	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs371930997	chr10:90794102-90794103	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs556910923	chr10:90794109-90794110	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs575278443	chr10:90794119-90794120	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs545628717	chr10:90794154-90794155	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs189251458	chr10:90794169-90794170	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs142718440	chr10:90794193-90794194	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs369390644	chr10:90794268-90794269	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs539847976	chr10:90794272-90794273	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs10458774	chr10:90794273-90794274	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs530358596	chr10:90794278-90794279	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs192165932	chr10:90794280-90794281	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs545693655	chr10:90794289-90794290	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs117006745	chr10:90794302-90794303	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs530318530	chr10:90794308-90794309	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs184005377	chr10:90794338-90794339	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs531023396	chr10:90794349-90794350	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs552662153	chr10:90794354-90794355	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs570959302	chr10:90794366-90794367	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs534987789	chr10:90794371-90794372	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs189896744	chr10:90794421-90794422	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs547036995	chr10:90794427-90794428	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs560588815	chr10:90794446-90794447	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs180756956	chr10:90794450-90794451	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs547073046	chr10:90794466-90794467	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs11202942	chr10:90794467-90794468	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs7082723	chr10:90794468-90794469	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs150980141	chr10:90794522-90794523	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs186189555	chr10:90794535-90794536	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs117931947	chr10:90794566-90794567	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs190357330	chr10:90794573-90794574	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs80114434	chr10:90794594-90794595	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs369877442	chr10:90794698-90794699	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs552320418	chr10:90794721-90794722	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs140812081	chr10:90794729-90794730	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:87)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21364760	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
Cancer	20164919	CNVD
small cell lung cancer	20016488	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Colorectal cancer	19359472	CNVD
Neurocytoma	17123091	CNVD
Prostate cancer	16461572	CNVD
Basal-like breast cancer	18066063	CNVD
Effusion lymphoma	18079361	CNVD
Lung cancer	21911935	CNVD
Myelofibrosis	22110671	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	22048815	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Glioblastoma multiforme	19435819	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Sezary syndrome	18413736	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Bipolar disorder	19114987	CNVD
Melanoma	17363583	CNVD

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90771800-90808600	Weak transcription	Primary T cells from cord blood	blood
2	chr10:90772400-90795000	Weak transcription	Placenta	Placenta
3	chr10:90772600-90795800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr10:90780800-90804200	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr10:90789800-90802000	Weak transcription	Ovary	ovary
6	chr10:90790000-90802800	Weak transcription	Fetal Intestine Small	intestine
7	chr10:90792000-90793800	Weak transcription	Left Ventricle	heart
8	chr10:90792000-90801800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr10:90792200-90807200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr10:90792600-90795000	Weak transcription	Adipose Nuclei	Adipose
11	chr10:90792800-90793800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr10:90792800-90793800	Weak transcription	Right Ventricle	heart
13	chr10:90792800-90794600	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr10:90792800-90794800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr10:90792800-90795000	Weak transcription	Right Atrium	heart
16	chr10:90792800-90795000	Weak transcription	NHDF-Ad	bronchial
17	chr10:90792800-90795600	Weak transcription	NHLF	lung
18	chr10:90792800-90796800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr10:90792800-90801600	Weak transcription	Esophagus	oesophagus
20	chr10:90792800-90801800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr10:90792800-90801800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr10:90792800-90807200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr10:90792800-90807400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr10:90792800-90814600	Weak transcription	GM12878-XiMat	blood
25	chr10:90793000-90794600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr10:90793000-90795000	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr10:90793000-90795000	Weak transcription	Osteobl	bone
28	chr10:90793000-90796800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr10:90793000-90801800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr10:90793200-90794800	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr10:90793200-90795400	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr10:90793200-90801600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr10:90793200-90801800	Weak transcription	HMEC	breast
34	chr10:90793400-90794000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr10:90793800-90794000	Enhancers	H1 Cell Line	embryonic stem cell
36	chr10:90793800-90794000	Enhancers	Right Ventricle	heart
37	chr10:90793800-90794200	Enhancers	Left Ventricle	heart
38	chr10:90794000-90795000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr10:90794200-90816800	Weak transcription	Left Ventricle	heart
40	chr10:90794600-90795000	Enhancers	HUES64 Cell Line	embryonic stem cell
41	chr10:90794800-90795000	Enhancers	iPS-18 Cell Line	embryonic stem cell
42	chr10:90794800-90796000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr10:90794800-90797800	Enhancers	Monocytes-CD14+_RO01746	blood
44	chr10:90795000-90795800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr10:90795000-90795800	Enhancers	Adipose Nuclei	Adipose
46	chr10:90795000-90795800	Enhancers	Placenta	Placenta
47	chr10:90795000-90795800	Enhancers	Right Atrium	heart
48	chr10:90795000-90795800	Enhancers	NHDF-Ad	bronchial
49	chr10:90795000-90796600	Enhancers	Primary monocytes fromperipheralblood	blood
50	chr10:90795400-90795800	Enhancers	Primary neutrophils fromperipheralblood	blood

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