Variant report

Variant	rs140812081
Chromosome Location	chr10:90794729-90794730
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv831943	chr10:90664836-90865834	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	esv3345168	chr10:90793772-90798470	Weak transcription Enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90771800-90808600	Weak transcription	Primary T cells from cord blood	blood
2	chr10:90772400-90795000	Weak transcription	Placenta	Placenta
3	chr10:90772600-90795800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr10:90780800-90804200	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr10:90789800-90802000	Weak transcription	Ovary	ovary
6	chr10:90790000-90802800	Weak transcription	Fetal Intestine Small	intestine
7	chr10:90792000-90801800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:90792200-90807200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr10:90792600-90795000	Weak transcription	Adipose Nuclei	Adipose
10	chr10:90792800-90794800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr10:90792800-90795000	Weak transcription	Right Atrium	heart
12	chr10:90792800-90795000	Weak transcription	NHDF-Ad	bronchial
13	chr10:90792800-90795600	Weak transcription	NHLF	lung
14	chr10:90792800-90796800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr10:90792800-90801600	Weak transcription	Esophagus	oesophagus
16	chr10:90792800-90801800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr10:90792800-90801800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr10:90792800-90807200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr10:90792800-90807400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr10:90792800-90814600	Weak transcription	GM12878-XiMat	blood
21	chr10:90793000-90795000	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr10:90793000-90795000	Weak transcription	Osteobl	bone
23	chr10:90793000-90796800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr10:90793000-90801800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr10:90793200-90794800	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr10:90793200-90795400	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr10:90793200-90801600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr10:90793200-90801800	Weak transcription	HMEC	breast
29	chr10:90794000-90795000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr10:90794200-90816800	Weak transcription	Left Ventricle	heart
31	chr10:90794600-90795000	Enhancers	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links