Variant report

Variant	esv3336276
Chromosome Location	chr11:102259476-102259948
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:102258248..102260134-chr11:102323035..102325053,2	K562	blood:
2	chr11:102259066..102260980-chr11:102262717..102264518,2	MCF-7	breast:
3	chr11:102246464..102249796-chr11:102259406..102262797,3	K562	blood:
4	chr11:102258611..102261367-chr11:102365540..102367730,3	MCF-7	breast:
5	chr11:102247349..102249796-chr11:102259275..102261867,2	K562	blood:
6	chr11:102216689..102219458-chr11:102257277..102260159,4	K562	blood:
7	chr11:102216520..102219549-chr11:102256607..102260159,4	K562	blood:
8	chr11:102257070..102259604-chr11:102272964..102275237,2	K562	blood:
9	chr11:102256750..102259635-chr11:102260009..102261641,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000110330	chromatin interactions
ENSG00000255337	chromatin interactions
ENSG00000152558	chromatin interactions

Extended variants
information (count: 22 )
Associated
traits (count: 84 )

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs12281328	chr11:102259482-102259483	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs181300620	chr11:102259487-102259488	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
3	rs561060619	chr11:102259546-102259547	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
4	rs529903163	chr11:102259587-102259588	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
5	rs542633278	chr11:102259593-102259594	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
6	rs559275480	chr11:102259599-102259600	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
7	rs76638843	chr11:102259607-102259608	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
8	rs575496626	chr11:102259640-102259641	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
9	rs186080580	chr11:102259652-102259653	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
10	rs531040880	chr11:102259659-102259660	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
11	rs189341208	chr11:102259724-102259725	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
12	rs11604008	chr11:102259744-102259745	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs182235496	chr11:102259754-102259755	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
14	rs370052002	chr11:102259802-102259803	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
15	rs77162398	chr11:102259803-102259804	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
16	rs566438116	chr11:102259814-102259815	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
17	rs538632578	chr11:102259830-102259831	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
18	rs187198882	chr11:102259883-102259884	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
19	rs139694963	chr11:102259884-102259885	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
20	rs544089252	chr11:102259895-102259896	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
21	rs554719927	chr11:102259945-102259946	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
22	rs548336	chr11:102259947-102259948	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:84)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Acute myeloid leukemia	20729466	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Cervical cancer	21062161	CNVD
Esophageal squamous carcinoma	18350619	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	22429812	CNVD
Breast cancer	16608533	CNVD
T-cell lymphomas	19863542	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Basal cell lymphoma	17053054	CNVD
Hepatocellular carcinoma	16785998	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21785460	CNVD
Melanoma	22183965	CNVD
Breast cancer	21958427	CNVD
Lung cancer	18438408	CNVD
Ewing''s sarcoma	17952124	CNVD
Renal cell carcinoma	18194544	CNVD
Breast cancer	17133270	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	17603634	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Basal cell lymphoma	16790693	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Breast cancer	21364760	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Mental retardation	19966786	CNVD
Non-small cell lung cancer	21829676	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Multiple myeloma	16616336	CNVD
Intracranial aneurysm	16715129	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal cancer	21851588	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Myelofibrosis	22110671	CNVD
Intracranial ependymoma	16609018	CNVD
Colorectal cancer	16912164	CNVD
Ovarian cancer	21720365	CNVD
Glioma	20126413	CNVD

Chromatin state (count:139 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102220000-102283000	Weak transcription	Hela-S3	cervix
2	chr11:102232400-102259600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr11:102235800-102259600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr11:102237000-102263800	Weak transcription	Small Intestine	intestine
5	chr11:102245400-102278000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:102245600-102266200	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr11:102245600-102275600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:102245800-102260400	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr11:102245800-102260800	Strong transcription	HSMM	muscle
10	chr11:102245800-102275000	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr11:102246000-102261800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:102246000-102278400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr11:102246200-102261800	Weak transcription	Gastric	stomach
14	chr11:102246200-102263800	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr11:102246200-102267000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr11:102246200-102274400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr11:102246200-102281000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr11:102246200-102281000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr11:102246200-102281000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:102246800-102277800	Weak transcription	Stomach Mucosa	stomach
21	chr11:102247400-102275400	Strong transcription	Primary B cells from cord blood	blood
22	chr11:102247800-102261800	Strong transcription	Liver	Liver
23	chr11:102247800-102263600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr11:102248600-102265600	Strong transcription	NH-A	brain
25	chr11:102249600-102261600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr11:102250200-102261200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr11:102250400-102261400	Weak transcription	Colon Smooth Muscle	Colon
28	chr11:102250600-102263800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr11:102250800-102259800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr11:102250800-102262000	Weak transcription	Colonic Mucosa	Colon
31	chr11:102250800-102264200	Weak transcription	Psoas Muscle	Psoas
32	chr11:102251000-102268400	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr11:102251200-102267400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr11:102251400-102271200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr11:102251800-102261400	Weak transcription	Brain Substantia Nigra	brain
36	chr11:102252000-102260000	Weak transcription	Brain Anterior Caudate	brain
37	chr11:102252000-102261600	Weak transcription	Brain Hippocampus Middle	brain
38	chr11:102252600-102260000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr11:102252600-102261200	Weak transcription	Brain Angular Gyrus	brain
40	chr11:102253000-102259600	Weak transcription	Stomach Smooth Muscle	stomach
41	chr11:102254000-102268000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr11:102254200-102260800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr11:102254400-102264400	Strong transcription	NHDF-Ad	bronchial
44	chr11:102254400-102265600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr11:102254600-102260400	Strong transcription	Cortex derived primary cultured neurospheres	brain
46	chr11:102254600-102266400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr11:102254600-102267400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr11:102254800-102267400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr11:102255000-102260600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr11:102255000-102260600	Strong transcription	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links