Variant report

Variant	rs139694963
Chromosome Location	chr11:102259884-102259885
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:102216520..102219549-chr11:102256607..102260159,4	K562	blood:
2	chr11:102247349..102249796-chr11:102259275..102261867,2	K562	blood:
3	chr11:102258248..102260134-chr11:102323035..102325053,2	K562	blood:
4	chr11:102216689..102219458-chr11:102257277..102260159,4	K562	blood:
5	chr11:102259066..102260980-chr11:102262717..102264518,2	MCF-7	breast:
6	chr11:102258611..102261367-chr11:102365540..102367730,3	MCF-7	breast:
7	chr11:102246464..102249796-chr11:102259406..102262797,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000255337	Chromatin interaction
ENSG00000110330	Chromatin interaction
ENSG00000152558	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3514195	chr11:102118479-102348362	Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv3514197	chr11:102118479-102348362	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	esv3336276	chr11:102259476-102259948	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102220000-102283000	Weak transcription	Hela-S3	cervix
2	chr11:102237000-102263800	Weak transcription	Small Intestine	intestine
3	chr11:102245400-102278000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:102245600-102266200	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr11:102245600-102275600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr11:102245800-102260400	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr11:102245800-102260800	Strong transcription	HSMM	muscle
8	chr11:102245800-102275000	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr11:102246000-102261800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:102246000-102278400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr11:102246200-102261800	Weak transcription	Gastric	stomach
12	chr11:102246200-102263800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr11:102246200-102267000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr11:102246200-102274400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr11:102246200-102281000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr11:102246200-102281000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr11:102246200-102281000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:102246800-102277800	Weak transcription	Stomach Mucosa	stomach
19	chr11:102247400-102275400	Strong transcription	Primary B cells from cord blood	blood
20	chr11:102247800-102261800	Strong transcription	Liver	Liver
21	chr11:102247800-102263600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr11:102248600-102265600	Strong transcription	NH-A	brain
23	chr11:102249600-102261600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr11:102250200-102261200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr11:102250400-102261400	Weak transcription	Colon Smooth Muscle	Colon
26	chr11:102250600-102263800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr11:102250800-102262000	Weak transcription	Colonic Mucosa	Colon
28	chr11:102250800-102264200	Weak transcription	Psoas Muscle	Psoas
29	chr11:102251000-102268400	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr11:102251200-102267400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr11:102251400-102271200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr11:102251800-102261400	Weak transcription	Brain Substantia Nigra	brain
33	chr11:102252000-102260000	Weak transcription	Brain Anterior Caudate	brain
34	chr11:102252000-102261600	Weak transcription	Brain Hippocampus Middle	brain
35	chr11:102252600-102260000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr11:102252600-102261200	Weak transcription	Brain Angular Gyrus	brain
37	chr11:102254000-102268000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr11:102254200-102260800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr11:102254400-102264400	Strong transcription	NHDF-Ad	bronchial
40	chr11:102254400-102265600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr11:102254600-102260400	Strong transcription	Cortex derived primary cultured neurospheres	brain
42	chr11:102254600-102266400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr11:102254600-102267400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr11:102254800-102267400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr11:102255000-102260600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr11:102255000-102260600	Strong transcription	Adipose Nuclei	Adipose
47	chr11:102255000-102267000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr11:102255400-102262000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr11:102255600-102274800	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr11:102255800-102261400	Weak transcription	Brain Germinal Matrix	brain

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